PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC16077_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 275aa MW: 30416.2 Da PI: 8.3162 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.2e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+k Fs++ L H++ H RrC16077_p1 71 YTCPFCNKGFSTSQALGGHQNAH 93 9*******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.93E-7 | 68 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.3E-6 | 69 | 97 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.6E-5 | 71 | 95 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.071 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MSSSSSSTPQ PVVIEVMEES KEIAAESNNL RLRSPQETIS RSHENPAFRP GPVRTGSEIM 60 KFYPSKSNKI YTCPFCNKGF STSQALGGHQ NAHKQERDWD KKRKEMEANF PGLAFLNPYL 120 DKPHLLLGGY SPDALSNDNH LGITLEPFKR ARIGGVYPSF SGGLTNMTIV PRMTPTRFFT 180 GTTCTNGSSS MGIAPRPSYN NNPPMIPRNI PPFPPPPRTI NLSSVCYSQN NALSEKNLIS 240 KVGNHKIVEI DDDDDNDQPE EGKFKSWGID LSLSL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189579 | 0.0 | AC189579.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011I15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438840.1 | 0.0 | PREDICTED: zinc finger protein JAGGED-like | ||||
TrEMBL | A0A3P6E606 | 1e-152 | A0A3P6E606_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g155500.1 | 1e-150 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G27880.1 | 1e-90 | C2H2 family protein |