PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15975_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 249aa    MW: 27623.9 Da    PI: 5.8311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15975_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-2082131255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a++k++g
  RrC15975_p1  82 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAESAALAYDEAALKFKG 131
                  7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-3381140IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-2282140IPR016177DNA-binding domain
CDDcd000181.32E-3382140No hitNo description
SMARTSM003803.7E-3782145IPR001471AP2/ERF domain
PROSITE profilePS5103224.80382139IPR001471AP2/ERF domain
PfamPF008475.1E-1482131IPR001471AP2/ERF domain
PRINTSPR003671.3E-118394IPR001471AP2/ERF domain
PRINTSPR003671.3E-11105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDPRFYGNMP FGGDEPEEDE NLFPFYSARS QHDMSVMVSA LSQVIGNQEN SSHDSPSVHN  60
PQDPSLPVAP THQDQGDLRR RHYRGVRQRP WGKWAAEIRD PKKAARVWLG TFETAESAAL  120
AYDEAALKFK GNKAKLNFPE RVQLGSNVIN NQLSNSTCYS SNQTETQNIP YYNQYYQDGS  180
NNDMLSFNLG GGYGSGNGVS MSHDHSLSTI TTAATTSSSS GGSSRQQEEQ DFARFWRFGD  240
SSSSPHSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2781142163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608621e-88AY560862.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g61890) mRNA, complete cds.
GenBankBT0313571e-88BT031357.1 Arabidopsis thaliana unknown protein (At5g61890) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437444.10.0PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH541e-112EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A3P6E7121e-140A0A3P6E712_BRAOL; Uncharacterized protein
STRINGBo2g161710.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52921851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-101ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]