PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15956_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 445aa    MW: 49826.6 Da    PI: 6.2355
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15956_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS512.51.6e-156554421374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA +v+sg+l++a+a+L +ls+l+sp gd+mqR+aayfteALa+r+++s+++lykal++++t+++n+see+++++lf++++Pilk+s+l++
  RrC15956_p1  55 LIHLLLTCASHVASGSLQNANAALDQLSHLVSPGGDTMQRVAAYFTEALANRILKSWPGLYKALNATQTRTNNVSEEVHVRRLFFDMFPILKVSYLLT 152
                  689*********************************************************************************************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  N+aIlea+ege++vH+iD+ +s+++QW+aL+qa++sRpegpp+lRiTgv++    +ke l ++++rL + Ae+l++pf+fn+ v+++l++l++e+Lrv
  RrC15956_p1 153 NRAILEAMEGEKMVHVIDLHASEPTQWLALIQAFNSRPEGPPHLRITGVHH----HKEVLDQMAHRLVEEAEKLDLPFQFNP-VVSSLDCLDVEQLRV 245
                  ***************************************************....9**************************.799************ PP

         GRAS 197 kpgEalaVnlvlqlhrll.................desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                  k+gEalaV++vlqlh++l                 ++s++l++  ++d +L+++++lsPkv+vv+eq++dhn+++++er+le+l++y+alfd+le+k+
  RrC15956_p1 246 KTGEALAVSSVLQLHNFLasdvnnnnnghslsgdsASSLPLSNsgKIDGFLNAIWGLSPKVMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKV 343
                  *********************************9966666665569999************************************************* PP

         GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  pr+s++rikvE++++g+ei++++aceg+errerhe+lekW++r++  GF++vpls++a+ qa++ll+ +++dgyr++eesg++v++W+drpL+svSaW
  RrC15956_p1 344 PRTSQDRIKVEKMVFGEEIKDIIACEGSERRERHEKLEKWSQRFDFDGFGNVPLSYFAMLQARRLLQGYGFDGYRIKEESGCAVICWQDRPLYSVSAW 441
                  ************************************************************************************************** PP

         GRAS 374 r 374
                  r
  RrC15956_p1 442 R 442
                  8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.69629422IPR005202Transcription factor GRAS
PfamPF035145.5E-15455442IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MVATFQEDNN VTSSVASSPL QVFSTMSLTR PTTLLSSSPS SPFQDLKPEE RGLFLIHLLL  60
TCASHVASGS LQNANAALDQ LSHLVSPGGD TMQRVAAYFT EALANRILKS WPGLYKALNA  120
TQTRTNNVSE EVHVRRLFFD MFPILKVSYL LTNRAILEAM EGEKMVHVID LHASEPTQWL  180
ALIQAFNSRP EGPPHLRITG VHHHKEVLDQ MAHRLVEEAE KLDLPFQFNP VVSSLDCLDV  240
EQLRVKTGEA LAVSSVLQLH NFLASDVNNN NNGHSLSGDS ASSLPLSNSG KIDGFLNAIW  300
GLSPKVMVVT EQDSDHNGST LMERLLESLY TYAALFDCLE TKVPRTSQDR IKVEKMVFGE  360
EIKDIIACEG SERRERHEKL EKWSQRFDFD GFGNVPLSYF AMLQARRLLQ GYGFDGYRIK  420
EESGCAVICW QDRPLYSVSA WRCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-66384441380Protein SCARECROW
5b3h_D2e-66384441380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486644.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_018486645.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A397YC940.0A0A397YC94_BRACM; Uncharacterized protein
TrEMBLM4DCN50.0M4DCN5_BRARP; Uncharacterized protein
STRINGBra014251.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]