PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC15896_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 116aa MW: 12886.6 Da PI: 10.6224 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 39.6 | 1.7e-12 | 3 | 25 | 36 | 58 |
CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58 +py+h+SRh hAlrRpRgsgGrF RrC15896_p2 3 QPYMHHSRHLHALRRPRGSGGRF 25 89********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51152 | 18.907 | 1 | 28 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.7E-9 | 3 | 25 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 116 aa Download sequence Send to blast |
MLQPYMHHSR HLHALRRPRG SGGRFLNTKS QNNAKKADGT KQTMPQPQPQ RSNSQDSDVL 60 HPESMTMNLS NRLGSEVTSM NYFLGSSLHP LGGMVMPSKW ITATAAMDNG CCNFKT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189193 | 1e-119 | AC189193.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003A10, complete sequence. | |||
GenBank | KC787679 | 1e-119 | KC787679.1 Brassica napus transcription factor subunit NF-YA2 (NF-YA2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013735933.1 | 2e-67 | nuclear transcription factor Y subunit A-2 | ||||
Swissprot | Q9M9X4 | 5e-60 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A078FP68 | 5e-66 | A0A078FP68_BRANA; BnaC05g19190D protein | ||||
STRING | Bo3g060160.1 | 9e-66 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G05690.1 | 2e-62 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
---|---|---|---|
|