PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC156_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 305aa    MW: 35035.5 Da    PI: 6.4515
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC156_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.8e-10173214546
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                kr +r   NR +A+rsR RK+++i eLe+ v +L+ e + L 
  RrC156_p6 173 KRVKRILANRQSAQRSRVRKLQYITELERSVTSLQVEVSVLS 214
                8999******************************99977666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.7E-12169233IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.393171234IPR004827Basic-leucine zipper domain
PfamPF001702.0E-8173217IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.3E-12173224No hitNo description
SuperFamilySSF579596.75E-11173227No hitNo description
CDDcd147037.64E-22174224No hitNo description
PROSITE patternPS000360176191IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAQLPPKIPN MTPQWPDFSS QKLSSTAVQN PSWVDEFLDF SACRRGNHRR SISDSIAFLE  60
APFVRGHTRR ENHHFDRFDD EQFMSMFKDD DGLHHNNTNN LSHDNNNNNN ELSSNTSTLS  120
DHNSFNGDKE QLSDHNRKHN EEVYSQCKTE PEDGTASNND SGDSSVNRII DPKRVKRILA  180
NRQSAQRSRV RKLQYITELE RSVTSLQVEV SVLSPRVAFL DHQRLLLNVD NSSLKQRIAA  240
LAQDKIFKDA HQEALKREIE RLREVYQQQS LEKMENANHS QVKGTGANSD VDIKPSIEQD  300
ELFNV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269|PubMed:17719007, ECO:0000269|PubMed:19449183}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0746571e-123AY074657.1 Arabidopsis thaliana At2g42380/MHK10.10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435209.10.0PREDICTED: basic leucine zipper 34
SwissprotF4IN231e-146BZP34_ARATH; Basic leucine zipper 34
TrEMBLA0A3N6SNN91e-177A0A3N6SNN9_BRACR; Uncharacterized protein
STRINGBra004689.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.21e-141bZIP family protein
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]