PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC156_p5

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

VOZ

Protein Properties

Length: 706aa MW: 79032 Da PI: 6.8382

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC156_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	415.1	1.2e-127	223	436	2	215
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsll 101 ppsaflgpkcalwdctrpa+gs+w+ dycs +h +lalne++pgt+pvlrp+gi+lkd+ll++al+ak+ gk+vgip+cega+++k+pwnaaelf+l+l+ RrC156_p5 223 PPSAFLGPKCALWDCTRPAHGSDWYMDYCSDYHGNLALNEDSPGTAPVLRPGGISLKDNLLIDALRAKTLGKNVGIPVCEGAVNTKCPWNAAELFHLELV 322 7************************************************************************************************* PP VOZ 102 egetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvs 201 egetirewlffdkprra++sgnrkqrslpdy+grgwhesrkq+mke++g+krsyymdpqp++ fewhl+ey+ine+da+alyrlelkl+++kks+kg+v+ RrC156_p5 323 EGETIREWLFFDKPRRAYDSGNRKQRSLPDYNGRGWHESRKQLMKEQEGQKRSYYMDPQPPGPFEWHLFEYQINESDACALYRLELKLTNGKKSPKGRVA 422 ************************************************************************************************ PP VOZ 202 kdsladlqkklgrl 215 kd+ladlqkk+ ++ RrC156_p5 423 KDPLADLQKKMEKM 436 *********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12999	6.6E-29	510	615	IPR028146	Glucosidase II beta subunit, N-terminal
Gene3D	G3DSA:4.10.400.10	5.9E-4	535	575	IPR002172	Low-density lipoprotein (LDL) receptor class A repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MSNYPKMTCV SSSHQNLMEK LMQLQERFSH LQAARREGRL NDHALLEAQI SQNLREWQAE 60 LSAPSPESSL LGGSISQFSE EIARLLKLND EEDDATSTLK EHAAPPKPDA FDQSLCSPGH 120 LEWTAEPFDQ TSFDVNFLSG FEDDVNNSET HGQQLHCAFQ EFDPSINTAP DFHAQKLSHL 180 DITSQLDYHL SEVRQEFNNT PSSVKLDVSD ESEFTTPSSV RVPPSAFLGP KCALWDCTRP 240 AHGSDWYMDY CSDYHGNLAL NEDSPGTAPV LRPGGISLKD NLLIDALRAK TLGKNVGIPV 300 CEGAVNTKCP WNAAELFHLE LVEGETIREW LFFDKPRRAY DSGNRKQRSL PDYNGRGWHE 360 SRKQLMKEQE GQKRSYYMDP QPPGPFEWHL FEYQINESDA CALYRLELKL TNGKKSPKGR 420 VAKDPLADLQ KKMEKMGQLT PEVASDKPSP PTKSRAKAAK GVKAATGNLT QETTVPATAA 480 STFSKAALAN MSRNNIKLLQ CVSSFLFAVV SVNCSTTPLV GVHPLDEKYF ESDIIRCKDG 540 SKSFPRDRLN DNFCDCLDGT DEPGTSACPN GKFYCRNTGS SPKFVYSSRV NDRICDCCDG 600 SDEYESSITC PNTCIMGGNV NYVYKPRTYR KSIDRQLGSV TTDPNRSLTI ANLQDIVKNL 660 QGMKLVFAVQ MVLIGFLVIL WMLRRRARSS KRRRYLLKSV HPNRSG

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MSNYPKMTCV SSSHQNLMEK LMQLQERFSH LQAARREGRL NDHALLEAQI SQNLREWQAE  60
LSAPSPESSL LGGSISQFSE EIARLLKLND EEDDATSTLK EHAAPPKPDA FDQSLCSPGH  120
LEWTAEPFDQ TSFDVNFLSG FEDDVNNSET HGQQLHCAFQ EFDPSINTAP DFHAQKLSHL  180
DITSQLDYHL SEVRQEFNNT PSSVKLDVSD ESEFTTPSSV RVPPSAFLGP KCALWDCTRP  240
AHGSDWYMDY CSDYHGNLAL NEDSPGTAPV LRPGGISLKD NLLIDALRAK TLGKNVGIPV  300
CEGAVNTKCP WNAAELFHLE LVEGETIREW LFFDKPRRAY DSGNRKQRSL PDYNGRGWHE  360
SRKQLMKEQE GQKRSYYMDP QPPGPFEWHL FEYQINESDA CALYRLELKL TNGKKSPKGR  420
VAKDPLADLQ KKMEKMGQLT PEVASDKPSP PTKSRAKAAK GVKAATGNLT QETTVPATAA  480
STFSKAALAN MSRNNIKLLQ CVSSFLFAVV SVNCSTTPLV GVHPLDEKYF ESDIIRCKDG  540
SKSFPRDRLN DNFCDCLDGT DEPGTSACPN GKFYCRNTGS SPKFVYSSRV NDRICDCCDG  600
SDEYESSITC PNTCIMGGNV NYVYKPRTYR KSIDRQLGSV TTDPNRSLTI ANLQDIVKNL  660
QGMKLVFAVQ MVLIGFLVIL WMLRRRARSS KRRRYLLKSV HPNRSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f0e_B	1e-29	529	614	2	87	Glucosidase 2 subunit beta
5h9o_B	1e-29	529	614	2	87	Glucosidase 2 subunit beta
5h9o_D	1e-29	529	614	2	87	Glucosidase 2 subunit beta
5ied_B	1e-29	529	614	2	87	Glucosidase 2 subunit beta
5iee_B	1e-29	529	614	2	87	Glucosidase 2 subunit beta
5ief_B	1e-29	529	614	2	87	Glucosidase 2 subunit beta
5ieg_B	1e-29	529	614	2	87	Glucosidase 2 subunit beta
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	682	688	LRRRARS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00018	PBM	Transfer from AT2G42400	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB125257	0.0	AB125257.1 Arabidopsis thaliana AtVOZ2 mRNA for Transcription factor AtVOZ2, complete cds.
GenBank	AF361831	0.0	AF361831.1 Arabidopsis thaliana At2g42400/MHK10.12 mRNA, complete cds.
GenBank	AY078048	0.0	AY078048.1 Arabidopsis thaliana At2g42400/MHK10.12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433046.1	0.0	PREDICTED: transcription factor VOZ2
Refseq	XP_018433047.1	0.0	PREDICTED: transcription factor VOZ2
Swissprot	Q9SLB9	0.0	VOZ2_ARATH; Transcription factor VOZ2
TrEMBL	A0A078JFQ3	0.0	A0A078JFQ3_BRANA; BnaC04g52750D protein
STRING	Bo4g015980.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11060	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42400.1	0.0	vascular plant one zinc finger protein 2

Publications ? help Back to Top
Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Koguchi M,Yamasaki K,Hirano T,Sato MH Vascular plant one-zinc-finger protein 2 is localized both to the nucleus and stress granules under heat stress in Arabidopsis. Plant Signal Behav, 2017. 12(3): p. e1295907 [PMID:28277968] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119]