PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC156_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 21297.2 Da PI: 10.0885 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.4e-05 | 19 | 41 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H RrC156_p4 19 YTCSFCRREFRSAQALGGHMNVH 41 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.96E-7 | 16 | 45 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.3E-4 | 17 | 44 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0061 | 19 | 41 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-5 | 19 | 42 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.219 | 19 | 46 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 21 | 41 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MNHYKNYEAG LIPWPPKNYT CSFCRREFRS AQALGGHMNV HRRDRAKLRQ IPSWLFEPHH 60 HTPVRNPNPS LNSSSSSSSS SSSITLAHHE PSLINQISKT TPFSPTRFDV LDYTISYGGL 120 MVEKEKNNSN VCSRDRRNRA IDSSRAAKCE ISRGDLMNKK DGVMGLELGM SLRNPKQVLD 180 LELRLGCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-13 | 14 | 41 | 2 | 29 | superman protein |
2l1o_A | 5e-13 | 14 | 41 | 2 | 29 | Transcriptional regulator SUPERMAN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142836.1 | 1e-107 | PREDICTED: transcriptional regulator SUPERMAN | ||||
Swissprot | Q9SLB8 | 1e-101 | ZFP11_ARATH; Zinc finger protein 11 | ||||
TrEMBL | A0A3P5YPF9 | 1e-106 | A0A3P5YPF9_BRACM; Uncharacterized protein | ||||
STRING | Bra004692.1-P | 1e-107 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9575 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 1e-102 | zinc finger protein 11 |