PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15647_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 520aa    MW: 59973 Da    PI: 9.7733
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15647_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-15696198
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 ffk l     + ++ l +p  f+++h  g ++++    +l++ +s  +W+vk+  + +   + lt+GWkeF+ a++L++gD+v+F+ ++++ f  +v++f
  RrC15647_p1  6 FFKPL--LPGFHNH-LKIPAAFFSKHieGRNEHG-NITKLRSdTSEITWKVKI--EDGL--MRLTDGWKEFALAHDLRVGDIVIFRQEKDMAF--HVTLF 95
                 56666..5566666.************6555555.55566654999*******..5555..56***********************7776777..99887 PP

                 - CS
           B3 98 r 98
                  
  RrC15647_p1 96 G 96
                 5 PP
2B375.55.9e-24145228690
                  ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  +++++l+ ++l++pk+f +++g++++++ +++l++e+g sW++ l+ +++ g+++lt+GW++F++ ngL++g f++Fkl++r ++
  RrC15647_p1 145 VTPSSLRYDMLYIPKSFSRANGLETRCG-EIVLMNEKGTSWTLALKRKNSCGTMYLTRGWRRFCRINGLRAGSFFTFKLIKRGGT 228
                  7899999****************99887.****************98888888**************************996443 PP
3B354.42.2e-17277370398
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  + ++++   k++rl+lp +f+++hg+++e  +++tl d++g +W+   + +k s+r+ l +GWkeF kan +k  ++++++l+++ ++++ +k+++
  RrC15647_p1 277 TLTLKPWDVKRSRLYLPLRFTRRHGINEE--TKMTLLDKNGVKWSTDPRSEKPSDRIRLVGGWKEFFKANCVKIDESIMLRLIWEGDTSCILKFYS 370
                  5555666777889************9954..58***************************************************998888888776 PP
4B347.82.6e-154114931198
                  HHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  11 lksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  + ++ l++p  f+++h           t +l++  s  +Wevk+  ++ ++r  lt+GWkeF+ a++L++gD+v+F+ ++++ f  +v++f 
  RrC15647_p1 411 FHTH-LTIPVAFFSKHiegR--YDHYNTAKLRSdASEITWEVKI--EGDGRR--LTEGWKEFALAHDLRVGDIVIFRQEKDMAF--HVTLFG 493
                  4455.9***********653..445568888876889*******..888888..9**********************7776777..998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-213105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-253111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.449398IPR003340B3 DNA binding domain
CDDcd100171.49E-16595No hitNo description
SMARTSM010192.1E-20698IPR003340B3 DNA binding domain
PfamPF023621.2E-101495IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-22137226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-21139232IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.088140237IPR003340B3 DNA binding domain
CDDcd100172.73E-22140232No hitNo description
SMARTSM010191.3E-28141237IPR003340B3 DNA binding domain
PfamPF023621.0E-22144229IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-18268362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-20272366IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-20275372IPR003340B3 DNA binding domain
PfamPF023621.3E-16275371IPR003340B3 DNA binding domain
PROSITE profilePS5086312.619275372IPR003340B3 DNA binding domain
CDDcd100175.82E-15275368No hitNo description
PROSITE profilePS5086312.266400495IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-22400507IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-18400502IPR015300DNA-binding pseudobarrel domain
CDDcd100173.65E-15401492No hitNo description
SMARTSM010196.9E-24403495IPR003340B3 DNA binding domain
PfamPF023621.2E-10413492IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MANQHFFKPL LPGFHNHLKI PAAFFSKHIE GRNEHGNITK LRSDTSEITW KVKIEDGLMR  60
LTDGWKEFAL AHDLRVGDIV IFRQEKDMAF HVTLFGPSCC EIQYGSCLDN KNKLVKIQSK  120
KKVKKNTIRE VESCTLHPSC YVANVTPSSL RYDMLYIPKS FSRANGLETR CGEIVLMNEK  180
GTSWTLALKR KNSCGTMYLT RGWRRFCRIN GLRAGSFFTF KLIKRGGTLI LRKSPSSTES  240
EDNSEDDEES NQDEKSFKKT RSTWKPSSSP IQNLFLTLTL KPWDVKRSRL YLPLRFTRRH  300
GINEETKMTL LDKNGVKWST DPRSEKPSDR IRLVGGWKEF FKANCVKIDE SIMLRLIWEG  360
DTSCILKFYS KVSKLLSSQG SNLGKDYAYF PFIVLLRMAN RHFFQPLLPG FHTHLTIPVA  420
FFSKHIEGRY DHYNTAKLRS DASEITWEVK IEGDGRRLTE GWKEFALAHD LRVGDIVIFR  480
QEKDMAFHVT LFGPSCCEIQ YGSCIDQDNN LGRFSCSVSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484684.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotO230761e-109REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLM4ETE70.0M4ETE7_BRARP; Uncharacterized protein
STRINGBra032078.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-101B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]