PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1558_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 369aa    MW: 40358.8 Da    PI: 8.028
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1558_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.3e-32221276156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 k+r++W+peLH+rF++a++qLGGs++AtPk+i+++mkv+gLt+++vkSHLQkYRl+
  RrC1558_p1 221 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLH 276
                 79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.038218278IPR017930Myb domain
SuperFamilySSF466891.08E-17218279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-28219279IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-26221276IPR006447Myb domain, plants
PfamPF002496.0E-8223274IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0055062Biological Processphosphate ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDAQKMQRCH EYVEALEEEQ KKIQVFQREL PLCLELVTQA IEACRKELSS TSTTSEQCSE  60
QTTSVSGGPV LEEFIPTKKT EENGEHESPT PPEENVKRSD WLRSVQLWNP SPDTNTNDTN  120
EVSNPERVVG KKAKVVEVKP NNSNCGGFQP FQREKKRVFS ESADPAPAVK AVDSAPAVKA  180
VTSALPATTT SSTTETCGVG KGGEEHIHQQ QSQSQSQTRR KQRRCWSPEL HRRFLHALQQ  240
LGGSHVATPK QIRDHMKVDG LTNDEVKSHL QKYRLHTRRP AASMTAQGNG NSQQPQFVVV  300
GGIWVPSPPQ DVPPPSDVAN NSGGIYAPVT LRPPPSPQSP KRSVERSSGQ CTSQAASSST  360
NTATSSPVS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00218DAPTransfer from AT1G68670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443801.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ8VZS31e-147HHO2_ARATH; Transcription factor HHO2
TrEMBLA0A3P6CU610.0A0A3P6CU61_BRAOL; Uncharacterized protein
STRINGBra038360.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34912863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.18e-98G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]
  2. Sun X, et al.
    The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides.
    J. Exp. Bot., 2018. 69(7): p. 1749-1764
    [PMID:29385617]