PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1555_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 491aa MW: 54867.3 Da PI: 7.1245

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1555_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	94.6	6.7e-30	222	273	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ RrC1555_p2 222 AEKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 273 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.2	210	293	IPR003035	RWP-RK domain
Pfam	PF02042	6.6E-26	225	273	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.7E-22	383	479	No hit	No description
SMART	SM00666	4.7E-24	393	476	IPR000270	PB1 domain
PROSITE profile	PS51745	27.257	393	476	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-19	394	473	No hit	No description
Pfam	PF00564	4.3E-18	394	474	IPR000270	PB1 domain
CDD	cd06407	1.59E-36	394	470	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MSCLKQSKTG CRHNDHNYIH CVSTIDDACY VGDPTVREFH EACSEHHLLK GQGVVGEAFL 60 TNGPCFSSDV SSYKKSEYPL SHHATMFGLH GTVAIRLRCI HTGSADFVLE FFLPKDCRDI 120 EEQRRMLNAL STIMAHVPRS LRTVTDKELE EEGDSTVETV PKTESTCEVH ESNSNNPQGV 180 GGTSEMGELG FDYGKGVSVN ENSTFSSGGG SSRVTERKKT KAEKNITLDV LRQYFAGSLK 240 DAAKSIGVCP TTLKRICRQH GIQRWPSRKI KKVGHSLQKI QRVIDSVQGV SGHHLPIGSF 300 YANFPNLASS QEASSSQQQQ SKQTTFLPSS HSQPAKSPGS SCSHTSSCSS ETQVNKEEPM 360 NKAREDAMTL SRSFKETQTT QLSPSTSSQD DDFLRIKVSY EEEKIRFRMR NSRRLKDLLW 420 EIAKRFSIEE VSRYDLKYLD EDNEWVLLRC DDDVEECVDV CRSFPGQTIK LLLQLSSQHL 480 QERSSVSGSL S

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MSCLKQSKTG CRHNDHNYIH CVSTIDDACY VGDPTVREFH EACSEHHLLK GQGVVGEAFL  60
TNGPCFSSDV SSYKKSEYPL SHHATMFGLH GTVAIRLRCI HTGSADFVLE FFLPKDCRDI  120
EEQRRMLNAL STIMAHVPRS LRTVTDKELE EEGDSTVETV PKTESTCEVH ESNSNNPQGV  180
GGTSEMGELG FDYGKGVSVN ENSTFSSGGG SSRVTERKKT KAEKNITLDV LRQYFAGSLK  240
DAAKSIGVCP TTLKRICRQH GIQRWPSRKI KKVGHSLQKI QRVIDSVQGV SGHHLPIGSF  300
YANFPNLASS QEASSSQQQQ SKQTTFLPSS HSQPAKSPGS SCSHTSSCSS ETQVNKEEPM  360
NKAREDAMTL SRSFKETQTT QLSPSTSSQD DDFLRIKVSY EEEKIRFRMR NSRRLKDLLW  420
EIAKRFSIEE VSRYDLKYLD EDNEWVLLRC DDDVEECVDV CRSFPGQTIK LLLQLSSQHL  480
QERSSVSGSL S

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018445394.1	0.0	PREDICTED: protein NLP5
Refseq	XP_018445395.1	0.0	PREDICTED: protein NLP5
Refseq	XP_018445396.1	0.0	PREDICTED: protein NLP5
Swissprot	Q9SFW8	0.0	NLP5_ARATH; Protein NLP5
TrEMBL	A0A1J3J0Y0	0.0	A0A1J3J0Y0_NOCCA; Protein NLP5 (Fragment)
TrEMBL	V4KCL8	0.0	V4KCL8_EUTSA; Uncharacterized protein
STRING	XP_006390206.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein