PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1548_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CAMTA
Protein Properties Length: 1007aa    MW: 112391 Da    PI: 6.0791
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1548_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11894.7e-59191362118
        CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                 l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+n++fqrrcy
  RrC1548_p3  19 LSEaQHRWLRPAEICEILRNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEDNENFQRRCY 117
                 45559********************************************************************************************** PP

        CG-1 100 wlLeeelekivlvhylevk 118
                 w+Le+el +iv+vhylevk
  RrC1548_p3 118 WMLEQELMHIVFVHYLEVK 136
                 ****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.82615141IPR005559CG-1 DNA-binding domain
SMARTSM010768.0E-8718136IPR005559CG-1 DNA-binding domain
PfamPF038595.6E-5221135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812965.6E-13420504IPR014756Immunoglobulin E-set
PROSITE profilePS5029710.471602651IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.27E-9602702IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-9603703IPR020683Ankyrin repeat-containing domain
CDDcd002046.70E-7608700No hitNo description
PROSITE profilePS500889.351619651IPR002110Ankyrin repeat
SMARTSM000150.32818840IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.01E-7819868IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.858820848IPR000048IQ motif, EF-hand binding site
PfamPF006120.0019820839IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092841863IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304842866IPR000048IQ motif, EF-hand binding site
PfamPF006124.4E-4844863IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1007 aa     Download sequence    Send to blast
MADRGSFGFA PQLDIQQLLS EAQHRWLRPA EICEILRNYQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML  120
EQELMHIVFV HYLEVKGNRI SSSGTKENNS NSLSGSTSVN IESTANTSST LSPLCEDADS  180
DHLALLKVLP LLFLGNRDGW ASQVHVNRVK ESDSQRLVGI PTLDASFENP LARFQTLPPY  240
NNALLAQTNP SNTGLMSVEG HLRSPLQNQV NWQIPVQDSL PLQKWPPMDS HSGMAAHGTD  300
LTLHETFSSL IGSQNQQPSF QAPFTSVEAA YIPKFGPEDL LYEASANQTL PLRKSLLKKE  360
DSLKKVDSFS RWVSNELAEM EDLQMQSSSG GGIAWTSVET AAAASSLSPS LSKDQRFTMI  420
DFWPKWTQTD SEVEVMVIGT FLLSPQEVTS YSWACMFGEV EVPAEILVDG VLCCHAPPHE  480
VGQVPFYITC SDRFSCSEVR EFDFLPGSTR KLNAADLYGA FINEASLHLR FENLLARVSS  540
SAQEHSIFED VGEKRRKISR IMLLKDEKES LLASTTEKGL TEVEAKERLI REEFEDKLYL  600
WLIHKVTEEG KGANILDEEG QGVLHLAAAL GYDWAIKPIL AAGVSINFRD ANGWEDTVAL  660
LVSLGADSGA LTDPSPELPL GKTASDLAYG NGHRGISGFL AESSLTSYLE KLTVDGKEDS  720
STDSSRAKAV QTVAERTATP MSYGDVPETL SMKDSLTAVL NATQAADRLH QVFRMQSFQR  780
KQLSEIGEKN EFGVSDELAV SFAAGKSKKA GHSSGGAAVH AAAVQIQKKY RGWKKRKEFL  840
LIRQRIVKIQ AHVRGHQVRK QYRAIIWSVG LLEKIILRWR RKGSGLRGFK RDAITKAPEP  900
VCAAPAQEDD YDFLKEGRKQ TEERLQKALT RVKSMAQYPE ARAQYRRLLT VVEGIRENEA  960
SSSSAMNNNN NNNISNTEEA ANYNEEDDLI DIDSLLDDDT FMSLAFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456913.10.0PREDICTED: calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A397XS620.0A0A397XS62_BRACM; Uncharacterized protein
STRINGBo9g018010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]