PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC15479_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CO-like

Protein Properties

Length: 340aa MW: 37937.1 Da PI: 5.8925

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC15479_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.5	2e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ RrC15479_p1 4 MCDFCNEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 6*****************************65677777776 PP
2	zf-B_box	28.3	3.5e-09	46	89	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42 +C++++ ++++ C d ++ lC++C ++H++ H+++++ RrC15479_p1 46 LICERCNAQPASVRCSDERVSLCQNCDWSGHNNdatsrHKRQSI 89 68*****************************9999999998875 PP
3	CCT	59.7	1e-20	283	326	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ RrC15479_p1 283 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 326 99***************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.712	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	4.40E-7	4	47	No hit	No description
SMART	SM00336	5.9E-8	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.812	43	89	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.1E-5	46	89	IPR000315	B-box-type zinc finger
CDD	cd00021	8.70E-7	47	89	No hit	No description
SMART	SM00336	0.15	48	89	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	15.1	283	325	IPR010402	CCT domain
Pfam	PF06203	2.1E-15	283	325	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MGYMCDFCNE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC 60 SDERVSLCQN CDWSGHNNDA TSRHKRQSIN CYSGCPSSEE LASIWSFCMD LDFSSGGQSA 120 CEQEMGLMTI DEGTGEDKTD VQNVNLDQPG TSSALAKEFG VSEDDFCGNL IMNEMDLAFA 180 KYDELFGTAY NSSKDLFEHG GIGSLFEKHE GSKAMQQQQP AGSNAASEDS FMTCRTEPII 240 CFSSQPAHSN ISFSVVMGES TSDCTREITS QEEINASSHA TTRNNAVMRY KEKKKARKFD 300 KRVRYVSRKE RADVRRRVKG RFVKSGEAYD YDPMSPARSY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439710.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
Refseq	XP_018439711.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
Swissprot	Q9LUA9	0.0	COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBL	A0A078IHY6	0.0	A0A078IHY6_BRANA; BnaA02g30040D protein
TrEMBL	A0A398AF85	0.0	A0A398AF85_BRACM; Uncharacterized protein
STRING	Bra020709.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1682	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-177	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]