PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15373_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 139aa    MW: 16018.4 Da    PI: 7.4094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15373_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.4e-145791797
                 E--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3 17 vlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 ++p  f++++ +g + e++t +l++  s  +Wevk+  + ++ r  lt+GWkeF+ a++L+ gD+++F+ ++++ f  +v+++
  RrC15373_p1  5 TIPVAFFSKYiQGRN-EQTTSKLRSdASKITWEVKI--EDGR-R--LTDGWKEFALAHDLRIGDILIFRQEKDMAF--HVTLL 79
                 79********84443.45577777758889******..4444.3..9**********************7776777..77765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.689182IPR003340B3 DNA binding domain
SMARTSM010191.8E-10282IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-16589IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-10576IPR003340B3 DNA binding domain
CDDcd100171.84E-12579No hitNo description
Gene3DG3DSA:2.40.330.102.6E-22695IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MLLQTIPVAF FSKYIQGRNE QTTSKLRSDA SKITWEVKIE DGRRLTDGWK EFALAHDLRI  60
GDILIFRQEK DMAFHVTLLG PSCCEIQYES CPEEEHNIGN IPKKKNPRKE KEIASLDPSC  120
FVAFVSPATL RHDKLVFYC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894332e-67AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484683.15e-83PREDICTED: putative B3 domain-containing protein REM15
SwissprotQ8GYM42e-60REM14_ARATH; B3 domain-containing protein REM14
TrEMBLA0A0D3C1V24e-76A0A0D3C1V2_BRAOL; Uncharacterized protein
STRINGBo4g154900.17e-77(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.17e-63B3 family protein