PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1536_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 275aa    MW: 31164.9 Da    PI: 5.4357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1536_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-2194144256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg++ taeeAa a+++a+ kl+ge
  RrC1536_p3  94 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTYNTAEEAAMAYDQAAYKLRGE 144
                 59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.23E-3493151No hitNo description
SuperFamilySSF541714.77E-2394151IPR016177DNA-binding domain
PROSITE profilePS5103223.05194151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-3294152IPR001471AP2/ERF domain
SMARTSM003804.0E-3794157IPR001471AP2/ERF domain
PRINTSPR003678.6E-1195106IPR001471AP2/ERF domain
PfamPF008478.4E-1595144IPR001471AP2/ERF domain
PRINTSPR003678.6E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAAIDTFNSS TDLSDPFKEE LMKVLKTFTN SVSSLPPTPN SIFGFNQTTP LCLNQLTPYQ  60
IHQIQNQLNQ RRTTTISNLS LKPVPMKNTT TQKLYRGVRQ RHWGKWVAEI RLPKNRTRLW  120
LGTYNTAEEA AMAYDQAAYK LRGELARLNF PQIRHEYGYG GGDRSLKPLH SSVQAKLEAI  180
CQSLRKTEDD DLPCSETEPF PPKTEYQERE FGLFRADENS ISYESQVGSS SPDSGITNAF  240
LEFSDLGFDD TGSFVLEKFP SVEIDWDAIS KLSES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2193151160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-2193151463ATERF1
3gcc_A6e-2193151463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450432.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
SwissprotO656651e-149ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLV4MDE31e-172V4MDE3_EUTSA; Uncharacterized protein
STRINGXP_006411774.11e-172(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-141ERF family protein