PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15343_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 418aa    MW: 46839.5 Da    PI: 5.1408
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15343_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.91.1e-97294152373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaalkl..fsevsPilkf 93 
                  ++lLl+cA+a++s+d++la++lL+ l+++a pd+ +++qRl++ f++AL +r a++ + l++++   +  + ++ +++++++++ l  f +++P+++f
  RrC15343_p1  29 EQLLLHCATAIDSNDAALAHQLLWVLNNIAPPDAdSSTQRLTSAFVRALLSRAASKIPALFSTVfgnSFFQPPPADEIHRFSVVDLagFIDLTPWHRF 126
                  79*******************************9679*************************9866556677777788888888889*********** PP

         GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vakr 185
                  ++++aN+aI  aveg ++vHi+D+++++++Q p+L++a+as+ + pp l++T+v+sp+++    + ++ee+g++L +fA++ +++++f+++   +++ 
  RrC15343_p1 127 GFIAANEAIITAVEGYSTVHIVDLSLTHCMQIPTLIDAMASKLNTPPLLKLTVVSSPSTFppfINISYEELGSKLVNFATTRNIEMQFTIVpstYSDG 224
                  **********************************************************999999**************************98766667 PP

         GRAS 186 ledleleeLrvkp...gEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                  +++l l++Lr+ +   +Eal+Vn++++l +++de+++ +      r+ +L++++sl+P++v+++e++ad++se++++r+ +a++y++  fd++++ + 
  RrC15343_p1 225 FSSL-LQHLRIYStsyNEALVVNCHMMLRYIPDETLTPSLpslsLRNVFLNQLRSLNPTIVTLIEEDADLTSENLVTRLRSAFNYFWIPFDTTDTFM- 320
                  7777.89999888889****************99875332226589**************************************************7. PP

         GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                    se+r+ +E+e ++++i+nvva+eg er+er+et+++W er++++ F+ v++se+a+++ k++l +++ ++g++ +++++slvl+Wk++++v++++W
  RrC15343_p1 321 --SEQRRLYEAE-ISWKIENVVAKEGLERVERTETKGRWLERMRDSEFGGVRVSEEAVSELKAMLGEHAvGWGMKKDDDDESLVLTWKGHSVVFATVW 415
                  ..9*********.************************************************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.1472395IPR005202Transcription factor GRAS
PfamPF035143.7E-9529415IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MTRTGIISPT RFPSFKSQRC SGGDASFMEQ LLLHCATAID SNDAALAHQL LWVLNNIAPP  60
DADSSTQRLT SAFVRALLSR AASKIPALFS TVFGNSFFQP PPADEIHRFS VVDLAGFIDL  120
TPWHRFGFIA ANEAIITAVE GYSTVHIVDL SLTHCMQIPT LIDAMASKLN TPPLLKLTVV  180
SSPSTFPPFI NISYEELGSK LVNFATTRNI EMQFTIVPST YSDGFSSLLQ HLRIYSTSYN  240
EALVVNCHMM LRYIPDETLT PSLPSLSLRN VFLNQLRSLN PTIVTLIEED ADLTSENLVT  300
RLRSAFNYFW IPFDTTDTFM SEQRRLYEAE ISWKIENVVA KEGLERVERT ETKGRWLERM  360
RDSEFGGVRV SEEAVSELKA MLGEHAVGWG MKKDDDDESL VLTWKGHSVV FATVWVPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-492341782474Protein SHORT-ROOT
5b3h_B5e-502341728420Protein SHORT-ROOT
5b3h_E5e-502341728420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437964.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A397XZB30.0A0A397XZB3_BRACM; Uncharacterized protein
STRINGBra036041.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein