PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15304_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 236aa    MW: 26661.3 Da    PI: 8.2165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15304_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-2067118256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  +y+GVr ++ +g+++AeIrdp+ +g  +r++lg+f+ta eAa+a+++a+ +l+g+
  RrC15304_p2  67 HYRGVRMRP-WGKFAAEIRDPTRRG--TRVWLGTFDTAIEAARAYDQAAFRLRGA 118
                  7********.**********97665..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-3266126IPR001471AP2/ERF domain
SMARTSM003801.4E-3467131IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2267127IPR016177DNA-binding domain
PfamPF008474.3E-1467117IPR001471AP2/ERF domain
CDDcd000184.59E-2767125No hitNo description
PROSITE profilePS5103223.88167125IPR001471AP2/ERF domain
PRINTSPR003671.2E-106879IPR001471AP2/ERF domain
PRINTSPR003671.2E-1091107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MIPLASNDSF TFQSNLPAIS QSNRKPPLKI ATPDRTEWIQ FAAGNSRREQ LPLPTTVVAA  60
AAEEKRHYRG VRMRPWGKFA AEIRDPTRRG TRVWLGTFDT AIEAARAYDQ AAFRLRGAKA  120
IVNFPLEVGM WKPRAEEDGG NKRKRDGEEE EEVMRVVAAK MVKTEESHCV EQVTSSLTGL  180
DEWDLTELLS MPLLSPLSPH PPFDVTLFAA MKGFNVEFWT RRTDNAYQSS YAFCVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2866128466ATERF1
3gcc_A4e-2866128466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458401.11e-147PREDICTED: ethylene-responsive transcription factor 6
SwissprotQ8VZ917e-92EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLA0A078JGZ51e-114A0A078JGZ5_BRANA; BnaA01g34910D protein
TrEMBLM4FGD01e-114M4FGD0_BRARP; Uncharacterized protein
STRINGBra040158.1-P1e-114(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.14e-82ethylene responsive element binding factor 6