PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC15277_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 36919.3 Da PI: 6.2239 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.9 | 2.7e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEdellvd ++++G g+W++ ++ g++R++k+c++rw +yl RrC15277_p1 14 KGPWTQEEDELLVDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.5 | 1.5e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++ +lG++ W++Ia+ ++ gRt++++k++w+++l RrC15277_p1 67 RGNFTEEEEETIINLHSLLGNK-WSSIASNLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.525 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.42E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.16E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.205 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-17 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MGRSPCCDEN GLKKGPWTQE EDELLVDHIQ KHGHGSWRAL PKQAGLNRCG KSCRLRWTNY 60 LRPDIKRGNF TEEEEETIIN LHSLLGNKWS SIASNLPGRT DNEIKNYWNT HLRKKLLQMG 120 IDPVTHRPRT DHLNVLAALP QLIAAANFNN LMNLNQNVQL DATTIAKAQI LHNMIQVLST 180 NNNNMPCYSP LTMQTNNNLF GQSSYLENQS LFGQPQSVSH FLGPNHDEKM MVENQIVDQP 240 LDSFHSLMQM DVQDNHNSLP LLVAASPEET KQSQMTIKNK DIVHRHDTSN PSSSNSSFTQ 300 DYHQPWCDTI DDEAGDSYWK EIIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-31 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018463755.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9S9Z2 | 2e-87 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A0D3B1I6 | 0.0 | A0A0D3B1I6_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g012180.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-172 | myb domain protein 9 |
Publications ? help Back to Top | |||
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