PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15277_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 324aa    MW: 36919.3 Da    PI: 6.2239
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15277_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.7e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEdellvd ++++G g+W++ ++  g++R++k+c++rw +yl
      RrC15277_p1 14 KGPWTQEEDELLVDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding58.51.5e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e +++++ +lG++ W++Ia+ ++ gRt++++k++w+++l
      RrC15277_p1  67 RGNFTEEEEETIINLHSLLGNK-WSSIASNLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-27564IPR009057Homeodomain-like
PROSITE profilePS5129418.525961IPR017930Myb domain
SuperFamilySSF466892.42E-3211108IPR009057Homeodomain-like
SMARTSM007179.3E-161363IPR001005SANT/Myb domain
PfamPF002492.6E-171461IPR001005SANT/Myb domain
CDDcd001672.16E-121661No hitNo description
PROSITE profilePS5129428.20562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-2865116IPR009057Homeodomain-like
SMARTSM007171.2E-1766114IPR001005SANT/Myb domain
PfamPF002495.0E-1767112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTQE EDELLVDHIQ KHGHGSWRAL PKQAGLNRCG KSCRLRWTNY  60
LRPDIKRGNF TEEEEETIIN LHSLLGNKWS SIASNLPGRT DNEIKNYWNT HLRKKLLQMG  120
IDPVTHRPRT DHLNVLAALP QLIAAANFNN LMNLNQNVQL DATTIAKAQI LHNMIQVLST  180
NNNNMPCYSP LTMQTNNNLF GQSSYLENQS LFGQPQSVSH FLGPNHDEKM MVENQIVDQP  240
LDSFHSLMQM DVQDNHNSLP LLVAASPEET KQSQMTIKNK DIVHRHDTSN PSSSNSSFTQ  300
DYHQPWCDTI DDEAGDSYWK EIIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-311211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463755.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9S9Z22e-87MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0D3B1I60.0A0A0D3B1I6_BRAOL; Uncharacterized protein
STRINGBo3g012180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-172myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]