PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15266_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 306aa    MW: 33664.9 Da    PI: 5.8699
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15266_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.7e-193484256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                  ++GVr++  +g+WvAeIr+p   + + +r +lg+f t  eAa a+++a+kkl+g+
  RrC15266_p1 34 TFRGVRQRT-WGKWVAEIREP---N-CgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 84
                 69****999.**********8...3.57*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-273389No hitNo description
PROSITE profilePS5103219.7963491IPR001471AP2/ERF domain
SMARTSM003804.2E-343497IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-193490IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-283490IPR001471AP2/ERF domain
PRINTSPR003672.5E-93546IPR001471AP2/ERF domain
PfamPF008472.1E-133584IPR001471AP2/ERF domain
PRINTSPR003672.5E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEEEELPPAK KRNVGRSRKG CMKGKGGPEN AKCTFRGVRQ RTWGKWVAEI REPNCGTRLW  60
LGTFNTSVEA AMAYDEAAKK LYGHEAKLNL LHPPQQQQQQ QKQGANRNLS FSGHGSGSWA  120
YNLDTVRGLD LGLGTSNGSR GFSFLQEDNH HNSSHYLSSS GSNLSWLLPI RSSSQDQESV  180
NTTSGCGSEG GGYTFSSKFK PQSLMMTPLD SNSSNGVWSR FLVGQENNTE YDVSSSCGSS  240
SDNKESVSVP SDGGGEGLHR PEVEEGTGYL EMDNLLEIDD LGLLIGKNGD FKNWCCDEFQ  300
HAWNWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-153590359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443213.10.0PREDICTED: dehydration-responsive element-binding protein 2G-like
SwissprotP618271e-149DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A078GG201e-174A0A078GG20_BRANA; BnaC09g39350D protein
TrEMBLA0A0D3EED91e-174A0A0D3EED9_BRAOL; Uncharacterized protein
STRINGBo9g155940.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-124ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]