PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1524_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 79aa    MW: 9128.02 Da    PI: 8.9561
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1524_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-091155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT  E +l+ +a + +  +   +W+ +ar +g g+++++++ ++ 
       RrC1524_p1 11 SWTRKENKLFERALAIYDQDtpdRWHNVARAVG-GKSAEEVRRHYE 55
                     6*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.289762IPR017884SANT domain
SMARTSM007172.2E-9860IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-141165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-61164IPR009057Homeodomain-like
PfamPF002496.9E-81155IPR001005SANT/Myb domain
CDDcd001671.23E-71258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASNSMSSNA SWTRKENKLF ERALAIYDQD TPDRWHNVAR AVGGKSAEEV RRHYELLIRD  60
VNDIESGRYP QPTYRSNGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-29178177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895491e-117AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109324.12e-53PREDICTED: protein RADIALIS-like 3
RefseqXP_013627032.12e-53PREDICTED: protein RADIALIS-like 3
RefseqXP_013681455.12e-53protein RADIALIS-like 3
RefseqXP_018451011.12e-53PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN07e-44RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A078GHX94e-52A0A078GHX9_BRANA; BnaA08g15280D protein
TrEMBLA0A0D3BK064e-52A0A0D3BK06_BRAOL; Uncharacterized protein
TrEMBLA0A397YBY44e-52A0A397YBY4_BRACM; Uncharacterized protein
TrEMBLA0A3N6QWY84e-52A0A3N6QWY8_BRACR; Uncharacterized protein
TrEMBLA0A3P6BN904e-52A0A3P6BN90_BRAOL; Uncharacterized protein
TrEMBLM4D2604e-52M4D260_BRARP; Uncharacterized protein
STRINGBra010560.1-P7e-53(Brassica rapa)
STRINGBo3g154100.17e-53(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.11e-32RAD-like 4