PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15163_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 303aa    MW: 34160.1 Da    PI: 4.9296
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15163_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20164214255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g++++eIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  RrC15163_p1 164 HYRGVRQRP-WGKFASEIRDPNKRG--SRIWLGTFDTAIEAARAYDEAAFRLRG 214
                  69*******.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.65E-32163222No hitNo description
SuperFamilySSF541712.09E-22164224IPR016177DNA-binding domain
PfamPF008475.1E-14164214IPR001471AP2/ERF domain
SMARTSM003802.1E-37164228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-33164223IPR001471AP2/ERF domain
PROSITE profilePS5103224.026164222IPR001471AP2/ERF domain
PRINTSPR003671.2E-10165176IPR001471AP2/ERF domain
PRINTSPR003671.2E-10188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MANTSEVSSA LWFIEKHLLD VASPVATDRR TIHESASTES SSDSSSIIFR SSSAPVDFSE  60
SEIKPEIIDL STPRFMDLIS TPFEFNTEVS VSDFDFKPTF QTGNQFEPEF KTQIPCASSS  120
DDSNSNRKPP LKISVPTKTE WIQFNPQPEV TKPVQPEAEE QRQHYRGVRQ RPWGKFASEI  180
RDPNKRGSRI WLGTFDTAIE AARAYDEAAF RLRGSKAILN FPLEVGKWKS RFDGEKKRKR  240
DEIDDEDVAV VGKVLKTEQS VNGNEACKLT ELCDWDLTGF LNFPLLSPLS PHPSFGYSQL  300
TVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-30163225163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-30163225466ATERF1
3gcc_A6e-30163225466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834940.0AC183494.1 Brassica oleracea Contig C, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478145.10.0PREDICTED: ethylene-responsive transcription factor 5
SwissprotO803411e-140EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A0D3D9T20.0A0A0D3D9T2_BRAOL; Uncharacterized protein
TrEMBLQ2A9R30.0Q2A9R3_BRAOL; Ethylene responsive element binding factor
STRINGBo7g077410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-106ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]