PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1513_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 594aa    MW: 66042.1 Da    PI: 5.4235
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1513_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.67e-09500548348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v+++G g W+ I +        Rt  ++k++w+++l
       RrC1513_p5 500 AWTLSEVTQLVEGVAKYGAGKWSEIKKLSFsshSYRTSVDLKDKWRNLL 548
                      7**************************9999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.702493552IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-13495554IPR009057Homeodomain-like
SMARTSM007175.6E-10497550IPR001005SANT/Myb domain
CDDcd116601.49E-20499549No hitNo description
SuperFamilySSF466895.6E-16499558IPR009057Homeodomain-like
PfamPF002497.6E-7500548IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MGTVVGTVED CREMFESSAA QTRITPFSPI NQIENPVAYK LVRVAGDGRL VPATDEEIFE  60
VNETDMHTES DACQSVGYLP AQGLPSRLSQ LEETSQANIG LVLFFAYILA ETFFFVSAIS  120
SGLLQSGYVE PYTDQVNSQL ECNEMLQKVD QDERLVTVMI DGPHMLSTPP DANIQCCNEN  180
KIFDEDHFQH EPLLQQQPIP FSSNTVEPFS NAEASPKETA TTAQKPDFSL VRGEIYLSNL  240
PIKALQETFK ATFGRETTVK DKTWLKRRIT MGLTNSCNVP TTNLTITNNK LVGNQDLTYD  300
VRATDHANGH SNAFGHSLTE DFSCEERAAK RVRKPTRRYI EELSETDEKQ PVVTSKDQKL  360
SEKSEVRSIS VSLGKRVTVT RVVSLAGSEI VVPYVSLVRR SRPRENIMAL MECHSSCLEA  420
KANSGESNML HSEVLKSASG PDRKELATSR SNNEEDVLTE VDQDMEPENI DSSGNSSDDN  480
NNIGLPAIQG GGLRRKHHRA WTLSEVTQLV EGVAKYGAGK WSEIKKLSFS SHSYRTSVDL  540
KDKWRNLLRT SFAQSPSNSM GSLKKHGSMH IPMQILLQVR ELAEKQALVP PNHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442243.10.0PREDICTED: uncharacterized protein LOC108814221 isoform X1
RefseqXP_018442888.10.0PREDICTED: uncharacterized protein LOC108814762
TrEMBLA0A3P6BCD40.0A0A3P6BCD4_BRACM; Uncharacterized protein
STRINGBra003870.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6