PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC15100_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24951.4 Da PI: 8.3645 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.6 | 1.4e-40 | 46 | 145 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i +lqqq++ l+ael +++ RrC15100_p1 46 PCAACKLLRRRCAQECPFSPYFSPHEPLKFASVHKVFGASNVSKMLMEVPEGHRADAANSLVYEANVRLRDPVYGCMGAIVALQQQVQALQAELTAVR 143 7**********************************************************************************************999 PP DUF260 99 ee 100 +e RrC15100_p1 144 SE 145 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.878 | 45 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.1E-41 | 46 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MQRERERLES EIGKKNKREA DALPHQMAGI RRPISGPLGA LNTITPCAAC KLLRRRCAQE 60 CPFSPYFSPH EPLKFASVHK VFGASNVSKM LMEVPEGHRA DAANSLVYEA NVRLRDPVYG 120 CMGAIVALQQ QVQALQAELT AVRSEILKYK QREAVATLIV PSNSQVAGYH NSGDVSVIAP 180 TPQTPSTPPQ RTAAHPDPPP PSSCVYSQPT TRALEYGEIE SENNSYFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-41 | 46 | 149 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-41 | 46 | 149 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009141907.1 | 1e-129 | PREDICTED: LOB domain-containing protein 15 isoform X2 | ||||
Swissprot | Q8L5T5 | 1e-120 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A087H476 | 1e-135 | A0A087H476_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H476 | 1e-136 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-115 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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