PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1498_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 522aa    MW: 58980.6 Da    PI: 7.4752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1498_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-16351032999
                 -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +  +++ l++ede+g++W++ ++  +  +ryvlt+GW+++vka++L +gDfv +++  +++ +l+++++r+
  RrC1498_p5  35 D--TERILRVEDEEGKTWQFGFSDLNVTQRYVLTRGWSNYVKAKQLVAGDFVFLQRLYTDSSRLFIGFRRR 103
                 3..33479**************999999***************************8767777799999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.6E-41104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-172112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1233101IPR015300DNA-binding pseudobarrel domain
PfamPF023626.3E-1436103IPR003340B3 DNA binding domain
PROSITE profilePS5086311.33540104IPR003340B3 DNA binding domain
CDDcd100177.83E-1140101No hitNo description
SMARTSM002552.3E-4143288IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015829.1E-17155260IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522001.07E-14158262IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS501048.86182255IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101409.8E-7191260IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525404.5E-30309505IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3006.5E-6315461IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.8E-16324505IPR002182NB-ARC
PRINTSPR003647.5E-13329344No hitNo description
PRINTSPR003647.5E-13405419No hitNo description
PRINTSPR003647.5E-13496510No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEKYLTTSDL SSLDTHVSAA DEDVGKYFRL ATVGDTERIL RVEDEEGKTW QFGFSDLNVT  60
QRYVLTRGWS NYVKAKQLVA GDFVFLQRLY TDSSRLFIGF RRREAGALGQ CQDLTSLATS  120
SEQLKEVETP PQLRSHGHRV TELNPVLVIS CGENQDSEER YFISYISKEL CLRGFTPLIY  180
DLTRSTLTAG LEMLHSSRVG VIIFSKNYVC SRQCQDEFVA IMDHPKANNL VLLPVFFKVE  240
VTDIRGQSGS FGRAFSRLEY SVLASQVPYL TSINKYQYMK GDEVLVVKNI VRDVFFLLNP  300
EPNMSVRGRL QMKSILSLLK FSQSSAPNIV GLWGMAGIGK TTISREIFRT QAERYDVCYF  360
LPDFHILCQT RGLSHLRDEF FSKICGEEKV IVDAYDTKLG FIRDRFLSKK VLIVLDGVSN  420
ARDAEFLVGG FGWLSGGHTL ILTSRNRQVL VQCNAKEICE IQKLSEHQSL HLFSQFSAGQ  480
NWKERTSLVS ELVNYASGIP LALCALDLGI YGLIDKSLIS HV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-1411038113B3 domain-containing transcription factor NGA1
5os9_B3e-1411038113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8428070.0FJ842807.1 Brassica rapa subsp. pekinensis isolate BrTNL50 disease resistance protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480582.10.0PREDICTED: probable WRKY transcription factor 19
TrEMBLD1GEE60.0D1GEE6_BRARP; Disease resistance protein
STRINGBra012540.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5462920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.11e-41WRKY family protein