PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1474_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 245aa    MW: 25598.7 Da    PI: 4.8201
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1474_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.2e-1781130155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  RrC1474_p2  81 PVYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYKTPEMAAAAYDVAALALKG 130
                 68****9.55.6*********854...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-1081130IPR001471AP2/ERF domain
SMARTSM003809.5E-2982144IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-1882140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-2782140IPR001471AP2/ERF domain
PROSITE profilePS5103219.80982138IPR001471AP2/ERF domain
PRINTSPR003671.9E-68394IPR001471AP2/ERF domain
CDDcd000182.25E-1783140No hitNo description
PRINTSPR003671.9E-6120140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MADLKDLSTE PKPISQASSS SVTIDPPRTC YYSLSSSSTC EHSCPLATVS IAAASSTTSS  60
NDNGTLMATA ASSTPRRKKH PVYRGIRCRS GKWVSEIREP KKTTRVWLGT YKTPEMAAAA  120
YDVAALALKG REAVMNFPES VGSYPLPVSS SAAHIRIAAA TAATTVGAAA AAANAAVKGG  180
EKEAGEVAEV VGSSAMEFVD EEELLNMPGL LEEMANGMMV APPWMGSPPS DDSPENSEGD  240
SLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-13801391273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454835.11e-177PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9CAN93e-84ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A3N6RRY31e-119A0A3N6RRY3_BRACR; Uncharacterized protein
STRINGBo9g036590.11e-118(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.11e-39ERF family protein