PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14690_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 390aa    MW: 42703.7 Da    PI: 5.2363
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14690_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573121.34.9e-38162250297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  +fqrlw+eeDei++LqG+idfk++tgksp++d++  y+++kksisf+vsk+q+++Kir+L+kK+ +k+k        sf+k+hdqk++ l++ iWg
  RrC14690_p1 162 AFQRLWTEEDEIAVLQGMIDFKKETGKSPYEDTNVYYDYIKKSISFEVSKNQFMDKIRSLRKKYIGKEKP-------SFTKPHDQKSYRLCQYIWG 250
                  69***************************************************************99876.......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.9E-30163250IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSKKRNPLED PPAASSTDDE EVESSAEEEE EEEDDDSSSE EDAPVKPPSS SAAAVTIAVP  60
GKPTASLPAA TQASDSESGS ETETDSESEP EQPTKNKGSG KAILTAKPAP PPPPVALALP  120
AKKSGAKRPS EVSSSKETTN SKRVKKDGED KKIGEDSKKP GAFQRLWTEE DEIAVLQGMI  180
DFKKETGKSP YEDTNVYYDY IKKSISFEVS KNQFMDKIRS LRKKYIGKEK PSFTKPHDQK  240
SYRLCQYIWG PDGMGLESAV KSNGASKKSQ KKTKKLDSVK QELSFGGASP NGKAVVGDDD  300
EKDVESSVAA KKHDWFENSF LVKGIAGFGV DEHCVKQRWS LVPVETKKKV EEKLKLLQAK  360
EIEYVLQKTE VLHEVTSMIA EASKNKLLDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466409.10.0PREDICTED: probable transcription factor At1g61730
SwissprotQ9SYA91e-125STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLM4EE671e-179M4EE67_BRARP; Uncharacterized protein
STRINGBra027078.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-80DNA-binding storekeeper protein-related transcriptional regulator