PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC14646_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 277aa MW: 31916.8 Da PI: 8.029 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.8 | 1.1e-49 | 16 | 140 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 pGfrFhPtdeel+v+yL++kve+k+++l e ik++diyk++PwdLp+ + + kewyfF+ r +ky+++ r+nr+t+sg+Wkatg dk v+s + RrC14646_p1 16 LPGFRFHPTDEELLVYYLRRKVENKPIKL-ELIKQIDIYKFDPWDLPRVSSVGAKEWYFFCMRGRKYKNSVRPNRVTDSGFWKATGIDKLVYS-NLDC 111 59***************************.99***************77777999**************************************.9999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vglkk+Lv+y g+a kg+ktdW+mhe+rl RrC14646_p1 112 VGLKKSLVYYLGSAGKGSKTDWMMHEFRL 140 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.427 | 15 | 163 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.58E-57 | 16 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-25 | 17 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MSGQGKDHEE DDEAKLPGFR FHPTDEELLV YYLRRKVENK PIKLELIKQI DIYKFDPWDL 60 PRVSSVGAKE WYFFCMRGRK YKNSVRPNRV TDSGFWKATG IDKLVYSNLD CVGLKKSLVY 120 YLGSAGKGSK TDWMMHEFRL PSSSESPTPQ AAEVWTLCRI FKRVTHHRNP TIVQPNRRPV 180 ITLTDSGSKT SSLDSDHTSH HVVESLSHKL HEPQLQPQTQ NPYYNQLTTV GFNQPTYNTC 240 HENNFLNLWN INGGDFIGDA TSWDELRSVI DGNTNHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-54 | 17 | 163 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-54 | 17 | 163 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-54 | 17 | 163 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-54 | 17 | 163 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-53 | 17 | 163 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-53 | 17 | 163 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-53 | 17 | 163 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-53 | 17 | 163 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-53 | 17 | 163 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-53 | 17 | 163 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-53 | 17 | 163 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-53 | 17 | 163 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-54 | 17 | 163 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-54 | 17 | 163 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481287.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 1e-157 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A078H0L4 | 0.0 | A0A078H0L4_BRANA; BnaA04g24740D protein | ||||
TrEMBL | A0A397ZQL5 | 0.0 | A0A397ZQL5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F9I0 | 0.0 | M4F9I0_BRARP; Uncharacterized protein | ||||
STRING | Bra037743.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-148 | NAC domain containing protein 42 |