PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14646_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 277aa    MW: 31916.8 Da    PI: 8.029
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14646_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.81.1e-49161402128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                   pGfrFhPtdeel+v+yL++kve+k+++l e ik++diyk++PwdLp+  + + kewyfF+ r +ky+++ r+nr+t+sg+Wkatg dk v+s +   
  RrC14646_p1  16 LPGFRFHPTDEELLVYYLRRKVENKPIKL-ELIKQIDIYKFDPWDLPRVSSVGAKEWYFFCMRGRKYKNSVRPNRVTDSGFWKATGIDKLVYS-NLDC 111
                  59***************************.99***************77777999**************************************.9999 PP

          NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                  vglkk+Lv+y g+a kg+ktdW+mhe+rl
  RrC14646_p1 112 VGLKKSLVYYLGSAGKGSKTDWMMHEFRL 140
                  ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.42715163IPR003441NAC domain
SuperFamilySSF1019414.58E-5716162IPR003441NAC domain
PfamPF023652.1E-2517140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSGQGKDHEE DDEAKLPGFR FHPTDEELLV YYLRRKVENK PIKLELIKQI DIYKFDPWDL  60
PRVSSVGAKE WYFFCMRGRK YKNSVRPNRV TDSGFWKATG IDKLVYSNLD CVGLKKSLVY  120
YLGSAGKGSK TDWMMHEFRL PSSSESPTPQ AAEVWTLCRI FKRVTHHRNP TIVQPNRRPV  180
ITLTDSGSKT SSLDSDHTSH HVVESLSHKL HEPQLQPQTQ NPYYNQLTTV GFNQPTYNTC  240
HENNFLNLWN INGGDFIGDA TSWDELRSVI DGNTNHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-541716319165NO APICAL MERISTEM PROTEIN
1ut4_B7e-541716319165NO APICAL MERISTEM PROTEIN
1ut7_A7e-541716319165NO APICAL MERISTEM PROTEIN
1ut7_B7e-541716319165NO APICAL MERISTEM PROTEIN
3swm_A1e-531716322168NAC domain-containing protein 19
3swm_B1e-531716322168NAC domain-containing protein 19
3swm_C1e-531716322168NAC domain-containing protein 19
3swm_D1e-531716322168NAC domain-containing protein 19
3swp_A1e-531716322168NAC domain-containing protein 19
3swp_B1e-531716322168NAC domain-containing protein 19
3swp_C1e-531716322168NAC domain-containing protein 19
3swp_D1e-531716322168NAC domain-containing protein 19
4dul_A7e-541716319165NAC domain-containing protein 19
4dul_B7e-541716319165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481287.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-157NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A078H0L40.0A0A078H0L4_BRANA; BnaA04g24740D protein
TrEMBLA0A397ZQL50.0A0A397ZQL5_BRACM; Uncharacterized protein
TrEMBLM4F9I00.0M4F9I0_BRARP; Uncharacterized protein
STRINGBra037743.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-148NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]