PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC14644_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 307aa MW: 35481.8 Da PI: 8.1995

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC14644_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.3	1.3e-48	26	154	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 pGfrFhPtdeelv +yL kkv kk +++e+i+++diyk++PwdLp + +++eke yfF++r +ky+++ r+nr+t sg+Wkatg dk+v+s + RrC14644_p1 26 LPGFRFHPTDEELVGFYLSKKVLLKKsSKIDEIISQIDIYKFDPWDLP-RSRNTEKESYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDgsS 122 59*****************887774778888***********.5567789**********************************9666 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++glkktLv+y g+a kg+ktdW+mhe+rl RrC14644_p1 123 KAVIGLKKTLVYYLGSAGKGSKTDWMMHEFRL 154 677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-50	25	189	IPR003441	NAC domain
PROSITE profile	PS51005	50.726	25	189	IPR003441	NAC domain
Pfam	PF02365	1.6E-24	27	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEEAMGSWDT RREEQEEEEG KQVLKLPGFR FHPTDEELVG FYLSKKVLLK KSSKIDEIIS 60 QIDIYKFDPW DLPRSRNTEK ESYFFCRRGR KYRNSIRPNR VTGSGFWKAT GIDKPVYSDG 120 SSKAVIGLKK TLVYYLGSAG KGSKTDWMMH EFRLPTANDT IPGGSTLLNP THSSLLHAEV 180 WTLCRIFKRN VSSRKYTPDW RELAGGKRMK PQQSKYQEAY ISFGDNESSS STNIIERKEN 240 YERNVFQLHQ THHDQNQILP MDTTSTTTQV DNTVPHLLND NIDNITYENW DELRSVVEFA 300 FGPSSLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-45	15	195	10	174	NAC domain-containing protein 19
3swm_B	9e-45	15	195	10	174	NAC domain-containing protein 19
3swm_C	9e-45	15	195	10	174	NAC domain-containing protein 19
3swm_D	9e-45	15	195	10	174	NAC domain-containing protein 19
3swp_A	9e-45	15	195	10	174	NAC domain-containing protein 19
3swp_B	9e-45	15	195	10	174	NAC domain-containing protein 19
3swp_C	9e-45	15	195	10	174	NAC domain-containing protein 19
3swp_D	9e-45	15	195	10	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026645	1e-103	AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBank	CP002686	1e-103	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437965.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	1e-72	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	M4FE32	0.0	M4FE32_BRARP; Uncharacterized protein
STRING	Bra039353.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	1e-159	NAC family protein

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]