PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14586_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 210aa    MW: 23991.1 Da    PI: 4.5273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14586_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.8e-145699755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YI+ Lq
  RrC14586_p1 56 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 99
                 57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1774998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1752115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.31E-135299No hitNo description
SMARTSM003533.2E-1455104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1755114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-115699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MENMDQEFNN YWETNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN  60
RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY EESKLEAEIR ELESTPKSSL  120
SFSKDFDRDL LVPVTSKKMK QLESGPSRSL IEVLEVTYMG ERTMVVNVTC NKRTETMVKL  180
CEVFESLNLK ILTSNLNSFS GMIFNTVFIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1454108963Transcription factor MYC2
5gnj_B2e-1454108963Transcription factor MYC2
5gnj_E2e-1454108963Transcription factor MYC2
5gnj_F2e-1454108963Transcription factor MYC2
5gnj_G2e-1454108963Transcription factor MYC2
5gnj_I2e-1454108963Transcription factor MYC2
5gnj_M2e-1454108963Transcription factor MYC2
5gnj_N2e-1454108963Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866660.0AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013712821.11e-146transcription factor bHLH35-like
SwissprotQ2HIV91e-136BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A3P6EEA31e-145A0A3P6EEA3_BRAOL; Uncharacterized protein
STRINGBo9g130890.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-123bHLH family protein