PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1442_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 360aa    MW: 40647.8 Da    PI: 7.1314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1442_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-05200219120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C k+F+r  n++ H+
  RrC1442_p4 200 FSCPLCFKTFNRYNNMQMHM 219
                 89*****************9 PP
2zf-C2H212.90.00032284306123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C  Cgk F  k + ++H +++
  RrC1442_p4 284 FACRRCGKAFAVKGDWRTHEKNC 306
                 78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-5200219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66200227IPR007087Zinc finger, C2H2
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
SuperFamilySSF576673.75E-6270304No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5271304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767284304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSDPACIFSN GFFDHYDYSF NYSTSLSHIY NSNGSLYYSS NTKNINPNST SPDSPPLREA  60
LPLLSLSPIH KHQKASVPHH EYYFRETTEQ SSNSNFLDHD LGQCQETQNH DVTVDLHLGL  120
PNLGGDAIAC GGGGSSSSDA ILDSSDQEHH HDLHQDRHQY QVVEVTLASD HDGHGGEQRG  180
NHHHYWIPTP SQILMGPTQF SCPLCFKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA  240
MLRLPCYCCA PGCKNNINHS RARPLKDFRT LQTHYKRKHG ARPFACRRCG KAFAVKGDWR  300
THEKNCGKLW YCSCGSDFKH KRSLKDHVKA FGNGHVPCFG NDCFGDHEDE EAASDVEHQE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118110.0AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458256.10.0PREDICTED: zinc finger protein WIP4-like
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A078J2W50.0A0A078J2W5_BRANA; BnaA01g36760D protein
STRINGBra023918.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]