PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14395_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 466aa    MW: 52498.9 Da    PI: 6.7479
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14395_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-155197148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WTteEde l +av+++  ++Wk++a+ +  ++++ qc +rwqk+l
      RrC14395_p2 51 KGGWTTEEDETLREAVHRFKAKSWKKVAEFFT-HKSEVQCMHRWQKVL 97
                     688****************************9.************986 PP
2Myb_DNA-binding56.94.8e-18103149148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ede +v++vk++G+  W+ I+  ++ gR +kqc++rw+++l
      RrC14395_p2 103 KGPWTQQEDETIVELVKRYGPAKWAMISDSLP-GRIGKQCRERWYNHL 149
                      79******************************.*************97 PP
3Myb_DNA-binding513.2e-16155198146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + +WT eE++ l++a+  +G++ W+ Ia+ ++ gRt++++k++w++
      RrC14395_p2 155 KEAWTIEEELVLLKAHLTYGNK-WAEIAKVLP-GRTDNSIKNHWNS 198
                      579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1724697IPR017930Myb domain
SuperFamilySSF466893.59E-1748111IPR009057Homeodomain-like
SMARTSM007173.4E-135099IPR001005SANT/Myb domain
PfamPF002492.5E-145197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2153113IPR009057Homeodomain-like
CDDcd001673.04E-115497No hitNo description
PROSITE profilePS5129429.31298153IPR017930Myb domain
SuperFamilySSF466891.5E-30100196IPR009057Homeodomain-like
SMARTSM007171.8E-16102151IPR001005SANT/Myb domain
PfamPF002493.1E-16103149IPR001005SANT/Myb domain
CDDcd001671.46E-13105149No hitNo description
Gene3DG3DSA:1.10.10.602.2E-24114157IPR009057Homeodomain-like
SMARTSM007171.3E-14154202IPR001005SANT/Myb domain
PROSITE profilePS5129421.164154204IPR017930Myb domain
PfamPF002491.3E-14155198IPR001005SANT/Myb domain
CDDcd001679.98E-11157200No hitNo description
Gene3DG3DSA:1.10.10.603.2E-22158203IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEDECIEDKQ STPSVSEGSS SSLLKSPGAV PSPATVSPTH RRTSGPVRRT KGGWTTEEDE  60
TLREAVHRFK AKSWKKVAEF FTHKSEVQCM HRWQKVLDPN LTKGPWTQQE DETIVELVKR  120
YGPAKWAMIS DSLPGRIGKQ CRERWYNHLN PGINKEAWTI EEELVLLKAH LTYGNKWAEI  180
AKVLPGRTDN SIKNHWNSSL KKKSEFLLAN NGSLPPPTAA AKNGVLIHKR DSDSVAQTSL  240
VTTQIINKPD EEGDDSSVPL QEVVAASSPM TGVSEYPPPS SPQLPKPENG FHLYYKPQRE  300
QHYMASEADK QRMYGYEYGC SPSTPPVIFI TPPPPPPPPP FRKECNNGSG PTSLESFLRE  360
AARTFPNMPS IIRKRPRKVV VVVQDHNKTD EEEEEAAKEV VDEKVIPEEE EEKQNNGSNV  420
YYISPPYRIG SKRRAAFKSR QLEFMSPEEE KADDDEAKSS EKDKLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-62542039158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-62542039158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018493368.10.0PREDICTED: uncharacterized protein LOC108863442 isoform X1
RefseqXP_018493369.10.0PREDICTED: uncharacterized protein LOC108863442 isoform X1
RefseqXP_018493370.10.0PREDICTED: uncharacterized protein LOC108863442 isoform X1
RefseqXP_018493371.10.0PREDICTED: uncharacterized protein LOC108863442 isoform X1
SwissprotQ8H1P90.0MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A398A6Q10.0A0A398A6Q1_BRACM; Uncharacterized protein
STRINGBra001311.1-P0.0(Brassica rapa)
STRINGBo3g062020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.11e-153myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]