PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC141_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 244aa MW: 27175.2 Da PI: 7.5809 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 92.7 | 7.5e-29 | 38 | 130 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................s 66 g+kdrhsk++T +g+RdRR+Rlsa++a++++dLqd+LG+ ++sk i+WLlq+a+ + l+ + RrC141_p2 38 GGKDRHSKVCTIRGLRDRRIRLSATTAIQLYDLQDRLGLSQPSKVIDWLLQAAQNDVAMLPPLqfppgfhlnlptaaaavgesfpgifesfdI 130 68*************************************************************444444444443333333333333332220 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-27 | 39 | 118 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.947 | 39 | 97 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MRTNSMGIKQ EGDNHYQTTS LSSLRQNPRI VRASRIFGGK DRHSKVCTIR GLRDRRIRLS 60 ATTAIQLYDL QDRLGLSQPS KVIDWLLQAA QNDVAMLPPL QFPPGFHLNL PTAAAAVGES 120 FPGIFESFDI GSCSSRTDQT TQRETLDLER SSLSHGFDID HHFYSNPSQS NKVYYNSSSS 180 SCHYNLGQLQ QSLLDQSCNV TVALSNNNNL NPPTVETMSS LFPRYPLFLE GGDQLQLFSS 240 NSNS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-17 | 44 | 98 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-17 | 44 | 98 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00497 | DAP | Transfer from AT5G08070 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC241004 | 0.0 | AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018475137.1 | 1e-169 | PREDICTED: transcription factor TCP17 | ||||
Refseq | XP_018475138.1 | 1e-169 | PREDICTED: transcription factor TCP17 | ||||
Swissprot | Q9LEZ9 | 6e-92 | TCP17_ARATH; Transcription factor TCP17 | ||||
TrEMBL | A0A3P6A0R2 | 1e-149 | A0A3P6A0R2_BRACM; Uncharacterized protein | ||||
STRING | Bo3g004670.1 | 1e-146 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G08070.1 | 8e-72 | TCP domain protein 17 |
Publications ? help Back to Top | |||
---|---|---|---|
|