PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC14130_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YA | ||||||||
Protein Properties | Length: 210aa MW: 23507.8 Da PI: 10.8224 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 88.8 | 7.5e-28 | 55 | 114 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +++VN+KQy++I++RRq+Rak+++ ++k ++++rkpy+h+SRh hAlrRpRgsgGrF RrC14130_p1 55 GTIFVNSKQYHAIIRRRQSRAKAAAvidKNKQSSRGRKPYMHHSRHLHALRRPRGSGGRF 114 689*********************999999999**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.6E-28 | 52 | 117 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 33.535 | 53 | 117 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.5E-21 | 56 | 78 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.1E-22 | 56 | 114 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.5E-21 | 91 | 114 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MMVLVNSPKR VMQRVQELYL SLMELLSQCN HLAWNSDLLN NSRVMLPLNM ETEDGTIFVN 60 SKQYHAIIRR RQSRAKAAAV IDKNKQSSRG RKPYMHHSRH LHALRRPRGS GGRFLNTKSG 120 TSAKKADGTK KPQTQSQAIS QQSNSQNSEV LHPERGTMNL TTGHNVSGSE VTSMNYFLSS 180 LVHSLGGMLT PSKWTASEAA VYNGCCYFKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 2e-15 | 54 | 115 | 2 | 60 | HAPB protein |
4g92_A | 2e-15 | 54 | 115 | 2 | 60 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352991 | 2e-65 | AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018434875.1 | 1e-114 | PREDICTED: nuclear transcription factor Y subunit A-2-like | ||||
Swissprot | Q9M9X4 | 3e-91 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A0D3AFG3 | 1e-104 | A0A0D3AFG3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A398AU28 | 1e-104 | A0A398AU28_BRACM; Uncharacterized protein | ||||
STRING | Bo1g150420.1 | 1e-105 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 2e-84 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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