PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14130_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 210aa    MW: 23507.8 Da    PI: 10.8224
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14130_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA88.87.5e-2855114258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   +++VN+KQy++I++RRq+Rak+++   ++k ++++rkpy+h+SRh hAlrRpRgsgGrF
  RrC14130_p1  55 GTIFVNSKQYHAIIRRRQSRAKAAAvidKNKQSSRGRKPYMHHSRHLHALRRPRGSGGRF 114
                  689*********************999999999**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.6E-2852117IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.53553117IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.5E-215678IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-2256114IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.5E-2191114IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MMVLVNSPKR VMQRVQELYL SLMELLSQCN HLAWNSDLLN NSRVMLPLNM ETEDGTIFVN  60
SKQYHAIIRR RQSRAKAAAV IDKNKQSSRG RKPYMHHSRH LHALRRPRGS GGRFLNTKSG  120
TSAKKADGTK KPQTQSQAIS QQSNSQNSEV LHPERGTMNL TTGHNVSGSE VTSMNYFLSS  180
LVHSLGGMLT PSKWTASEAA VYNGCCYFKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-1554115260HAPB protein
4g92_A2e-1554115260HAPB protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529912e-65AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434875.11e-114PREDICTED: nuclear transcription factor Y subunit A-2-like
SwissprotQ9M9X43e-91NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A0D3AFG31e-104A0A0D3AFG3_BRAOL; Uncharacterized protein
TrEMBLA0A398AU281e-104A0A398AU28_BRACM; Uncharacterized protein
STRINGBo1g150420.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.12e-84nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]