PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14084_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 254aa    MW: 29238.6 Da    PI: 8.2301
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14084_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-19105155256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr++  +g+WvAeIr p++   r r +lg+f+taeeAa a+++ + kl+g+
  RrC14084_p1 105 LYRGVRQRQ-WGKWVAEIRKPKS---RSRLWLGTFDTAEEAAMAYDRQAFKLRGH 155
                  59****999.**********954...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.80E-34104163No hitNo description
PROSITE profilePS5103223.591105162IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-23105163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-32105163IPR001471AP2/ERF domain
SMARTSM003807.5E-39105168IPR001471AP2/ERF domain
PfamPF008472.8E-13106155IPR001471AP2/ERF domain
PRINTSPR003671.9E-11106117IPR001471AP2/ERF domain
PRINTSPR003671.9E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKKMRNLDHR PKPYFSFSSS SSNSLGAFPF SLDPTFHNHQ QQQLGYVPVN QQHDQKQMIS  60
FSPQQPQQQY MFKYWSDTLN LSPRGRRMMM MNQESSVQPY SATKLYRGVR QRQWGKWVAE  120
IRKPKSRSRL WLGTFDTAEE AAMAYDRQAF KLRGHNATLN FPERFVNKEV ELHDSACESS  180
SLDQKQTETQ QPNEANLESK EVSLSSDGGL EGGMAEAWFN AVTSGWGPES PLWDDLDSSQ  240
FLHSSSSCPM KPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21104164162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21104169470ATERF1
3gcc_A2e-21104169470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111KKMRNLDHRPK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447938.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
SwissprotQ9M0J31e-117ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A397YIG01e-153A0A397YIG0_BRACM; Uncharacterized protein
STRINGBra010383.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-104ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]