PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC139_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 210aa    MW: 23842.1 Da    PI: 6.9388
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC139_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof114.44.7e-362077461
     zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                a+ cprCds+ntkfCyynnyslsqPry Ck+CrryWt+GG+lrn+P+Gg+ rk k+ 
  RrC139_p2 20 PARVCPRCDSDNTKFCYYNNYSLSQPRYSCKNCRRYWTRGGTLRNIPIGGSGRKTKRP 77
               5789**************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-231676IPR003851Zinc finger, Dof-type
PfamPF027011.1E-312276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.7732276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDNLNIFARG DNEVNEEKPP ARVCPRCDSD NTKFCYYNNY SLSQPRYSCK NCRRYWTRGG  60
TLRNIPIGGS GRKTKRPKID QPSAEIQHVN HHQPFSHGQE TNEFVGSFGG SSSSSSDVVD  120
GNHFGNLHEI HGDMLNKAPD PVRTFPPMEA LNISDVSFRQ DYYDVGSNDL IGNPLINRAN  180
DDDSNIWNES YNNTMYMNHN ASTSGRRRYL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728780.0AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence.
GenBankAC2410200.0AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741408.11e-127dof zinc finger protein DOF4.4-like
SwissprotQ9SUA95e-69DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A3P5ZS951e-124A0A3P5ZS95_BRACM; Uncharacterized protein
TrEMBLM4FCH01e-124M4FCH0_BRARP; Uncharacterized protein
STRINGBra038789.1-P1e-125(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.14e-64Dof-type zinc finger domain-containing protein