PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC13921_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 40aa MW: 4542.17 Da PI: 8.5178 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.5e-09 | 10 | 37 | 1 | 28 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIa 28 +g+WT+eEd ll +++ ++G g W+ ++ RrC13921_p1 10 KGAWTAEEDSLLRQCIDKYGEGKWHQVP 37 79**********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.028 | 5 | 40 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-11 | 6 | 37 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-8 | 7 | 38 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.8E-8 | 10 | 37 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.05E-5 | 12 | 36 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 40 aa Download sequence Send to blast |
MEGSPKGLRK GAWTAEEDSL LRQCIDKYGE GKWHQVPLRA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. | |||||
UniProt | Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM403451 | 8e-51 | KM403451.1 Brassica rapa cultivar Zi He anthocyanin R2R3-MYB transcription factor (MYB3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001289193.1 | 2e-21 | transcription factor MYB114-like | ||||
Refseq | XP_013613998.1 | 3e-21 | PREDICTED: transcription factor MYB114-like | ||||
Refseq | XP_013716215.1 | 2e-21 | transcription factor MYB114-like | ||||
Refseq | XP_013737797.2 | 3e-21 | transcription factor MYB114-like | ||||
Refseq | XP_018468743.1 | 2e-21 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9FNV8 | 1e-20 | MY114_ARATH; Transcription factor MYB114 | ||||
Swissprot | Q9ZTC3 | 3e-20 | MYB90_ARATH; Transcription factor MYB90 | ||||
TrEMBL | A0A078IZV4 | 6e-20 | A0A078IZV4_BRANA; BnaCnng28030D protein | ||||
TrEMBL | A0A078J656 | 6e-20 | A0A078J656_BRANA; BnaA02g35530D protein | ||||
TrEMBL | A0A089G7N7 | 5e-20 | A0A089G7N7_BRACM; Anthocyanin R2R3-MYB transcription factor | ||||
TrEMBL | A0A0D2ZRG6 | 6e-20 | A0A0D2ZRG6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AQM7 | 5e-20 | A0A3P6AQM7_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6CTB8 | 6e-20 | A0A3P6CTB8_BRAOL; Uncharacterized protein | ||||
TrEMBL | M4FF91 | 5e-20 | M4FF91_BRARP; Uncharacterized protein | ||||
STRING | Bra039763.1-P | 9e-21 | (Brassica rapa) | ||||
STRING | Bo00835s060.1 | 1e-20 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66380.1 | 5e-23 | myb domain protein 114 |