PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1388_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 245aa    MW: 26384.1 Da    PI: 7.8077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1388_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-0597119123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC+ CgksF++   L  H  +H
  RrC1388_p1  97 FKCTVCGKSFTSYQALGGHKTSH 119
                 89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.14E-996119No hitNo description
SMARTSM003550.004997119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.07497124IPR007087Zinc finger, C2H2
PfamPF139121.6E-1397121IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-497119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SuperFamilySSF576672.14E-9159186No hitNo description
SMARTSM003550.48164186IPR015880Zinc finger, C2H2-like
PfamPF139128.7E-12164188IPR007087Zinc finger, C2H2
PROSITE profilePS501578.933164186IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MALETLNSPS SATVTARPLL RYREEMEPDH LEQWAKRKRT KRQRLDQNHH SQDQEPTPSE  60
EEYLALCLLM LARGTAVQPP LTPPPPPRRP SSDHRDFKCT VCGKSFTSYQ ALGGHKTSHR  120
KPPANSVDVP SSQEPPSNNN GHSNVVFSGN GTASNGVNQS GKIHTCSICF KSFPSGQALG  180
GHKRCHYDGG NNGNGNGCSS NSVGVIGGSD VSDVDEERSS ERCAIGGHRG FDLNLPADQV  240
SVVSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488722.11e-146PREDICTED: zinc finger protein AZF1
SwissprotQ9SSW11e-109AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A3P6AQA91e-134A0A3P6AQA9_BRAOL; Uncharacterized protein
STRINGBo3g096410.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.12e-96zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]