PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1372_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 227aa    MW: 26385.9 Da    PI: 7.1951
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1372_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.9e-103380146
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     rg+ T eE+  +++++ ++G++       Ia++++ gRt++++k++w++
       RrC1372_p1 33 RGNITLEEQFMILKLHSLWGNRyvtKDQNIAQYLP-GRTDNEIKNYWRT 80
                     7899*******************999999******.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.018427IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-6726IPR009057Homeodomain-like
SuperFamilySSF466892.38E-161393IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-172785IPR009057Homeodomain-like
PROSITE profilePS5129416.1982886IPR017930Myb domain
SMARTSM007171.5E-63284IPR001005SANT/Myb domain
PfamPF002497.4E-83380IPR001005SANT/Myb domain
CDDcd001671.16E-63780No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MFIWYMFKHV GLKRTGKSCR LRWLNYLRPD VRRGNITLEE QFMILKLHSL WGNRYVTKDQ  60
NIAQYLPGRT DNEIKNYWRT RVQKQAKHLK CDVNSDLFKE TMKNVWMPRL VERINAQTPS  120
PTYDPVDSVI TNPGQSIDKQ TLVEPSFVLT PDHHHQLVQT SELSATSSNS PAETLSDVQD  180
RVLNGSGYDP VGQTGFMELY DWGCDGGDNM WTDDERPVLP RDHILFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-14148640108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1441910.0KJ144191.1 Brassica rapa subsp. chinensis MYB transcription factor (MYB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665603.11e-130transcription factor MYB78-like
TrEMBLA0A3P6DFS51e-128A0A3P6DFS5_BRACM; Uncharacterized protein
STRINGBo4g198510.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.11e-113myb domain protein 2