PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13650_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 198aa    MW: 21930.5 Da    PI: 6.962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13650_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1751100255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  RrC13650_p1  51 SFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTAEKAARAHDVAALAIKG 100
                  69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.68E-3450110No hitNo description
PfamPF008471.2E-1150100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3251109IPR001471AP2/ERF domain
PROSITE profilePS5103222.98551108IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2151109IPR016177DNA-binding domain
SMARTSM003801.8E-3951114IPR001471AP2/ERF domain
PRINTSPR003671.5E-105263IPR001471AP2/ERF domain
PRINTSPR003671.5E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDHSSSSESH LDDCRSFQDS PAPERTVNSN NPKKKRVKKD NDEKAVSKHP SFRGVRMRQW  60
GKWVSEIREP RKKSRIWLGT FSTAEKAARA HDVAALAIKG RSAHLNFPEL AYHFPRPASV  120
NPKDIQAAAA AAAAVAIDLE VETSLPSPAS TEHSYPAMTA TADDAFTDLP DLLLDVNHKL  180
DGFWDCLPSE EPFFTGSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-18471081072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13138PKKKRVKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480751.11e-134PREDICTED: ethylene-responsive transcription factor ERF038
SwissprotQ9ZQP32e-83ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A0D3C4D71e-114A0A0D3C4D7_BRAOL; Uncharacterized protein
TrEMBLA0A3N6S1H81e-114A0A3N6S1H8_BRACR; Uncharacterized protein
STRINGBo4g184540.11e-114(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-69ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]