PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1360_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 188aa MW: 21396.2 Da PI: 5.5842 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.8e-09 | 105 | 145 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L+ l+P +K++ a++L +A++YIk L RrC1360_p3 105 ARHRRERISERIRILQILVPGG-----TKMDTASMLDEAIRYIKFL 145 599*****************87.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.799 | 96 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-12 | 102 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.02E-13 | 102 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-11 | 104 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-6 | 106 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.09E-6 | 119 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MNNKSDHHHH NDPIGMAAMD QHPQLRIFNP FTSSHLPPLS SSLSATTFFS EDQEEEEEPV 60 EELSAMKEMM YKVAAMQPVD IDPETVKIPK RRNVRISDDP QTVAARHRRE RISERIRILQ 120 ILVPGGTKMD TASMLDEAIR YIKFLKRQIR LLDNPPPPQD QDSQAMTTSW VSELPPPDFG 180 SGAGGRDW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018443360.1 | 1e-104 | PREDICTED: transcription factor HEC3-like | ||||
Swissprot | Q9LXD8 | 2e-69 | HEC3_ARATH; Transcription factor HEC3 | ||||
TrEMBL | A0A078G9C4 | 2e-87 | A0A078G9C4_BRANA; BnaC09g46950D protein | ||||
STRING | Bra028620.1-P | 2e-82 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4449 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09750.1 | 2e-52 | bHLH family protein |
Publications ? help Back to Top | |||
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