PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1346_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18692.1 Da PI: 7.7891 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.3 | 1.5e-44 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca+dCv++pyfpa++p+kfanvh++FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+ +lal+++ RrC1346_p3 13 PCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQGQLALAQA 111 7**********************************************************************************************9997 PP DUF260 100 e 100 e RrC1346_p3 112 E 112 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.096 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-44 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE 60 LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID VLQGQLALAQ AEVVHLRVRH 120 STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGIFSHMDMV DEASLGESMW SC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-50 | 9 | 114 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-50 | 9 | 114 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473839 | 1e-173 | AB473839.1 Arabidopsis thaliana ASL6 mRNA for ASYMMETRIC LEAVES2-like 6 protein, complete cds. | |||
GenBank | BT015067 | 1e-173 | BT015067.1 Arabidopsis thaliana At1g31320 gene, complete cds. | |||
GenBank | BT015665 | 1e-173 | BT015665.1 Arabidopsis thaliana At1g31320 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486923.1 | 1e-126 | PREDICTED: LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 1e-106 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A078INQ1 | 1e-124 | A0A078INQ1_BRANA; BnaCnng19520D protein | ||||
TrEMBL | A0A0D3D5L9 | 1e-124 | A0A0D3D5L9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A291LQV0 | 1e-124 | A0A291LQV0_BRARR; Transcription factor LBD4 | ||||
TrEMBL | A0A397YJZ4 | 1e-124 | A0A397YJZ4_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6EJ49 | 1e-124 | A0A3P6EJ49_BRAOL; Uncharacterized protein | ||||
TrEMBL | M4DEI6 | 1e-124 | M4DEI6_BRARP; Uncharacterized protein | ||||
STRING | Bra014907.1-P | 1e-124 | (Brassica rapa) | ||||
STRING | Bo7g041000.1 | 1e-124 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-103 | LOB domain-containing protein 4 |