PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC13412_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 311aa MW: 35930.4 Da PI: 5.0616

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC13412_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.3	2e-55	6	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv +yL +kv+g+++el e+i+evd+yk+ePwdLp + k+ ++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd++v s RrC13412_p1 6 LPPGFRFHPTDEELVGYYLDRKVNGQTIEL-EIIPEVDLYKCEPWDLPGTEKSflpgNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRAVES 102 79**************************.99***********532334454788*********************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ ++g+kktLv+y+grap+g +t+Wvmheyrl RrC13412_p1 103 -KKMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 135 .8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-62	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	59.297	6	159	IPR003441	NAC domain
Pfam	PF02365	3.5E-29	7	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV GYYLDRKVNG QTIELEIIPE VDLYKCEPWD LPGTEKSFLP 60 GNDMEWYFYS TRDKKYPNGS RTNRATRAGY WKATGKDRAV ESKKMKMGMK KTLVYYRGRA 120 PHGLRTNWVM HEYRLTHLPS SSPSSSIKES YALCRVFKKQ IQIPKRKDEE MMMGTSVGKE 180 KKEELEEENM WRKCEMERES EEDENLKIAS AETSSSELTQ GILLDEANNS SSFALHFSSS 240 LLDDHDQIFA NDSYLPYYTP LQLQDFPQLS MNEAQIMSID NSKQQDFQCR DSMNGTLDEI 300 FSFSSSATLP L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-55	1	160	15	169	NAC domain-containing protein 19
3swm_B	5e-55	1	160	15	169	NAC domain-containing protein 19
3swm_C	5e-55	1	160	15	169	NAC domain-containing protein 19
3swm_D	5e-55	1	160	15	169	NAC domain-containing protein 19
3swp_A	5e-55	1	160	15	169	NAC domain-containing protein 19
3swp_B	5e-55	1	160	15	169	NAC domain-containing protein 19
3swp_C	5e-55	1	160	15	169	NAC domain-containing protein 19
3swp_D	5e-55	1	160	15	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018482117.1	0.0	PREDICTED: NAC domain-containing protein 45-like
Swissprot	Q9FFI5	2e-82	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A397YME5	0.0	A0A397YME5_BRACM; Uncharacterized protein
STRING	Bo6g036040.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-149	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]