PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC13206_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 208aa MW: 23309.4 Da PI: 9.9489

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC13206_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+ksF + L H+++H RrC13206_p1 4 HKCKLCSKSFCNGRALGGHMKSH 26 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.598	4	26	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.5E-6	4	26	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MQKHKCKLCS KSFCNGRALG GHMKSHLVSS HKPTRKKLLG DSVYSSSSSS DGKTQAYGLR 60 ENPRKSCRVF NPDPESSTVY NSETETEPES VDPVRKRGLG EVSKKKRTKK TRSKKRVFEN 120 SSESGEKQKR SKSNSDEWPE PASSVSDGSP EQDLAMCLMM LSRDSREIKP IVAAEEMKPE 180 KRHVPELRRC MIDLNLPPPQ ETDVVSAI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480844.1	1e-129	PREDICTED: zinc finger protein ZAT9-like
TrEMBL	A0A3N6RW94	1e-117	A0A3N6RW94_BRACR; Uncharacterized protein
STRING	Bra012701.1-P	1e-117	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9510	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16610.1	6e-90	C2H2-like zinc finger protein