PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13182_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 322aa    MW: 34929.7 Da    PI: 5.5105
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13182_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.96.3e-991132274374
         GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg........skeeleet 161
                   +e++++++l++e+sP++k+++++aN aIl+a + ++  H++Df+i++G+Q+ +Ll+aL++R+  ++pp ++iT+v + + g         + +l+++
  RrC13182_p1  11 GKEHINSTQLLYELSPCFKLGFMAANLAILDANDDATSFHVVDFEIGEGGQYFNLLHALSTRRsgKNPPVVKITAVTNVSDGfsvaggdrGEGRLKTV 108
                  789*********************************************************99977779**********8888999***99999***** PP

         GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                  g+rL+++ ++lg++++fnv++  rl+ l+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P vv++ve+e++ n+++Fl r++e
  RrC13182_p1 109 GDRLSELGDRLGISLKFNVVAGLRLSGLSRESLGCDPDEPLAVNLAFKLYRVPDESVCMENPRDELLRRVKGLNPSVVTLVEEEMNSNTAPFLGRVSE 206
                  *******************9888*************************************************************************** PP

         GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveees 355
                  ++ +y al+ds+e+++p+ +++r+ vE+  +gr++ n+vaceg +r+er+e ++kWr+r+++aGF+ +p+sek+a+ +k+ l++ +    g++v+ee+
  RrC13182_p1 207 SCACYGALLDSVESTVPSSNSDRARVEEG-IGRKLINAVACEGIDRVERCEVFGKWRMRMSMAGFELMPVSEKIAEAMKSRLSNGNrvHPGFTVKEEN 303
                  *****************************.**************************************************9998777789******** PP

         GRAS 356 gslvlgWkdrpLvsvSaWr 374
                  g +++gW++r+L ++SaWr
  RrC13182_p1 304 GGVCFGWMGRTLAVASAWR 322
                  ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.8121300IPR005202Transcription factor GRAS
PfamPF035142.2E-9611322IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
AAAESSAQLY GKEHINSTQL LYELSPCFKL GFMAANLAIL DANDDATSFH VVDFEIGEGG  60
QYFNLLHALS TRRSGKNPPV VKITAVTNVS DGFSVAGGDR GEGRLKTVGD RLSELGDRLG  120
ISLKFNVVAG LRLSGLSRES LGCDPDEPLA VNLAFKLYRV PDESVCMENP RDELLRRVKG  180
LNPSVVTLVE EEMNSNTAPF LGRVSESCAC YGALLDSVES TVPSSNSDRA RVEEGIGRKL  240
INAVACEGID RVERCEVFGK WRMRMSMAGF ELMPVSEKIA EAMKSRLSNG NRVHPGFTVK  300
EENGGVCFGW MGRTLAVASA WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-36232264375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457492.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-179SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A3P6EH050.0A0A3P6EH05_BRAOL; Uncharacterized protein
STRINGBo9g083130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-165SCARECROW-like 8