PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1314_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CAMTA
Protein Properties Length: 838aa    MW: 94928.6 Da    PI: 7.6867
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1314_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1104.76.5e-3330121291
        CG-1   2 lke.kkrwlkneeiaaiLenfekheltl.elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                 l+e ++rwl+++ei+a+L n + +++ + ++  + ++g++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg  e +++yYah+ + 
  RrC1314_p1  30 LEEaRSRWLRPNEIHAVLSNPKYFTINHvSSICHMTCGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGDEERIHVYYAHGLKR 121
                 55669********************99989999*******************************************************9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143742.2626153IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-3529130IPR005559CG-1 DNA-binding domain
PfamPF038599.3E-2632121IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.9E-15297383IPR014756Immunoglobulin E-set
PfamPF018335.1E-4298382IPR002909IPT domain
PfamPF127966.1E-7487564IPR020683Ankyrin repeat-containing domain
CDDcd002045.39E-15492594No hitNo description
SuperFamilySSF484039.48E-17493598IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.0E-17495597IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.963502597IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.728535567IPR002110Ankyrin repeat
SMARTSM002483.4E-6535564IPR002110Ankyrin repeat
PROSITE profilePS500967.144684708IPR000048IQ motif, EF-hand binding site
PfamPF006120.21684700IPR000048IQ motif, EF-hand binding site
SMARTSM0001585699721IPR000048IQ motif, EF-hand binding site
SMARTSM000150.024722744IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.255723747IPR000048IQ motif, EF-hand binding site
PfamPF006120.013724744IPR000048IQ motif, EF-hand binding site
SMARTSM0001513797819IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.224798827IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MDGDGGSGGL IGSEIHGFHT LQDLDVQTML EEARSRWLRP NEIHAVLSNP KYFTINHVSS  60
ICHMTCGRII LFDRKMLRNF RKDGHNWKKK KDGRTVKEAH EHLKVGDEER IHVYYAHGLK  120
RTSSLYITVT HKRFVYCAAS TSGDSNSPIS VSAHSSSNLV AVEDIDFNPD GSLCLAANNT  180
PVVRLHDINT LDWDDLLVQT DLHDQSAPIV DDMSYFSEQL QNAAKDSAQH VTVADESLDA  240
LLNNGPQSRE NFGKWMDSFI GDPNGSLEDP SFEAMVTLDH DPLAPHHHSD LPQQVFNITE  300
VSPAWAYSSE KTKIVMTGLL HNSYQHLGNS NLFCICGDSC VPAEYVQAGV YRCFIPPHSP  360
GMVNLYLSAD GHKPISQCFT FEHRPLPVFS GETVFKNDQE SKWEEFELQV RLAHLLFTSS  420
NKLNVLSTNI TPENLLDAKK LSNKTSHLLN SWAYLIKSVQ GNKVSFDQAK DHIFELTLKN  480
RIKEWLMEKV LEGRSARDYD SKGLGVIHLC AILGYTWSIQ LFSLSGLSLD FRDKQGWTAL  540
HWAAYYGREK MVAALLTAGA KPNLVTDSRK DNLGGCTPAD LAQQNGFDGI AAYLAEKCLV  600
AQFVAMKIAG NISGTLEARK GEMSSQGALP DDEQNLKDAL AAYRTAAEAA ARIQGAFREK  660
ALKTARSKVI QFANKDEEAK SIIAAMKIQN AFRKYDTRRK IEAAYRIQCR FQTWKMRREF  720
LNMRRQAIRI QAAFRGLQAR KQYRKILWSV GVLEKAIMRW RHKRKLFIGV QVSEAEEAEE  780
KAEEDFYKAS QRQAEERLER SVVRVQAMFR SKKAQEDYRR MKLTHEETQL EYEFLHDI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492571.10.0PREDICTED: calmodulin-binding transcription activator 6 isoform X1
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLA0A397ZGR50.0A0A397ZGR5_BRACM; Uncharacterized protein
STRINGBra022188.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]