PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC12993_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 391aa MW: 44875.2 Da PI: 7.1389

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC12993_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.2	3.8e-27	75	156	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k+ykk k++++++ +s +++y++++e RrC12993_p1 75 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEYKKAKHQDRGN---VSAKMSYYKEIE 156 ******************************************************************85...77889**998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-4	65	137	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.979	67	131	IPR017877	Myb-like domain
SMART	SM00717	0.0096	71	133	IPR001005	SANT/Myb domain
CDD	cd12203	4.10E-30	73	138	No hit	No description
Pfam	PF13837	1.8E-20	74	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MFVSDKPRPN EFYKDDTTNS STTARNMIID GDLQPHNHHH HNHHHLQPQQ ILLLGESSGG 60 EDHEVKAPKK RAETWVQDET RSLIMFRRGM DGLFNTSKSN KHLWEQISAK MREKGFDRSP 120 TMCTDKWRNL LKEYKKAKHQ DRGNVSAKMS YYKEIEEILR ERSKKVTQYS KSPTNTPIAK 180 VDSFMQFTDK GFDDPSVPFG SVVEGNGRPA LNLERSLDHD GHPLAITAVD AVPANGVPPW 240 NWRETPGNGG DAHGQPFGGR VITVKLGDYT RRIGVDGTAE AIKETIRSAF RLRTRRAFWL 300 EDEDQVVRCL DRDMPLGNYL LHVDDGLAIR VCHYDESNQL PVHTEEKIFY TEEDYRDFLA 360 RRGWTCLQVD GFRNIDNMDD LQPGAVYRGV R

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MFVSDKPRPN EFYKDDTTNS STTARNMIID GDLQPHNHHH HNHHHLQPQQ ILLLGESSGG  60
EDHEVKAPKK RAETWVQDET RSLIMFRRGM DGLFNTSKSN KHLWEQISAK MREKGFDRSP  120
TMCTDKWRNL LKEYKKAKHQ DRGNVSAKMS YYKEIEEILR ERSKKVTQYS KSPTNTPIAK  180
VDSFMQFTDK GFDDPSVPFG SVVEGNGRPA LNLERSLDHD GHPLAITAVD AVPANGVPPW  240
NWRETPGNGG DAHGQPFGGR VITVKLGDYT RRIGVDGTAE AIKETIRSAF RLRTRRAFWL  300
EDEDQVVRCL DRDMPLGNYL LHVDDGLAIR VCHYDESNQL PVHTEEKIFY TEEDYRDFLA  360
RRGWTCLQVD GFRNIDNMDD LQPGAVYRGV R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	4e-53	69	154	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018482120.1	0.0	PREDICTED: trihelix transcription factor GT-1-like
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0D3C9T7	0.0	A0A0D3C9T7_BRAOL; Uncharacterized protein
STRING	Bo5g017510.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]