PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1294_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 341aa MW: 37699.6 Da PI: 9.3452

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1294_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	1e-38	64	123	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk++ RrC1294_p4 64 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGTLRNVPVGGSSRKNKRV 123 6899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	63	122	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	66	122	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.873	68	122	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MMNVKPMEQI MIPNNNTHQS NTTSSPRPNN ILTSNGVSAA GATVSGVRSN NNNTAVVVER 60 KARPQEKLNC PRCNSTNTKF CYYNNYSLTQ PRYFCKGCRR YWTEGGTLRN VPVGGSSRKN 120 KRVPSSSSSN ILLTTPSSLG LTTTLPDLNP PILFSNQIPN KSKESSQDLN LLSFPVMQDQ 180 HQNHHVHMSQ FLQMPKMEGN VNITHHQPSA LELLRRGVNV SSISYMPSGP VMDSSSNVMY 240 TSSGFPTMVD YKPSSLSFST DHQGTGHNNH NRSDDTHHQG RVLFPFGDQM KEITSSITQE 300 VDHDDNQQQK SHGNNNNNNS SSPNNGYWSG MFSTTGGGSS W

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352859	0.0	AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434986.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
Refseq	XP_018437892.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
Swissprot	Q9ZPY0	0.0	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A3P5YNV7	0.0	A0A3P5YNV7_BRACM; Uncharacterized protein
TrEMBL	M4CJZ1	0.0	M4CJZ1_BRARP; Uncharacterized protein
STRING	Bra004525.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	1e-159	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]