PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC12849_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 32740.6 Da PI: 8.007 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 57 | 106 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g RrC12849_p1 57 RYRGVRRRP-WGRYAAEIRDPM----SkERRWLGTFDTAEEAACAYDCAARAMRG 106 59*******.**********84....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.1E-33 | 57 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 57 | 114 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-29 | 57 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.66E-31 | 57 | 113 | No hit | No description |
PROSITE profile | PS51032 | 21.957 | 57 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-11 | 57 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MEEAIMRLEG AEHRETNNHS LKRKPSRTSS TAPGSPGGVT IAKAAPGGGA SGGTSIRYRG 60 VRRRPWGRYA AEIRDPMSKE RRWLGTFDTA EEAACAYDCA ARAMRGLKAR TNFVYPIPSL 120 DSFHHRLFSP PPMNMFLLRD VLNSQPLSPF AYPHCNISNV SGFVNEPFTN VNDVSEDRSP 180 KAKRSSTIDN DNMVSILQPE PTGSGLLQEV VQGFLPKPIS QQTSTPPKTN QPIVLENGFQ 240 TDLGLPDHVN VEGNGFNQVK YHGELGWTDH VSGFDSAKMY QNGNAGMFYQ YCFHDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 47 | 113 | 4 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16339853, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018450248.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2 | ||||
Swissprot | Q9FYK5 | 1e-170 | ESR2_ARATH; Ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | A0A078HEC6 | 0.0 | A0A078HEC6_BRANA; BnaA08g19170D protein | ||||
STRING | Bra010972.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7355 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-144 | DORNROSCHEN-like |