PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC12807_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GeBP

Protein Properties

Length: 264aa MW: 29765 Da PI: 10.0076

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC12807_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	80.9	2e-25	58	143	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++r+w+eeDe+++L+Gl+d++aktg +p +++ +fy+f+ +si + +sk+q+++Kir+LK Kf ++k +++ +++f lsk+iW RrC12807_p2 58 SSRIWNEEDELTVLKGLVDYRAKTGNEPNSNWADFYRFLGDSIAAIYSKDQVLTKIRKLKGKFIVSMQK---------GNTSKSEAFLLSKRIWA 143 78*******************************************************************.........44455678888888885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.9E-19	59	142	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MPMVNLDFSD GASPPSHILR KSPRKQASEP SPPQPAAAAE QVTKKKKKKK KTLASSSSSR 60 IWNEEDELTV LKGLVDYRAK TGNEPNSNWA DFYRFLGDSI AAIYSKDQVL TKIRKLKGKF 120 IVSMQKGNTS KSEAFLLSKR IWAPQNEPDQ SVNHSSKNGL ACTTQWSNYL CFLLGKDEMG 180 NESLPKADFE GNDESWAVRD AFETMVSKGL SDYQKKLQLE KLMKLGSGKR KELSDEWKEL 240 CAEEVKLNIK RFKFSAMLAE SAKW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	44	50	KKKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269\|PubMed:12535344, ECO:0000269\|PubMed:21875893, ECO:0000269\|PubMed:29192025, ECO:0000305\|PubMed:18162594}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269\|PubMed:12535344}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018445009.1	1e-143	PREDICTED: GLABROUS1 enhancer-binding protein-like 1
Swissprot	Q9ASZ1	2e-55	STKLO_ARATH; GLABROUS1 enhancer-binding protein
TrEMBL	A0A0D3CT54	1e-126	A0A0D3CT54_BRAOL; Uncharacterized protein
STRING	Bo6g064770.1	1e-127	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	4e-46	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Nietzsche M,Schießl I,Börnke F The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Front Plant Sci, 2014. 5: p. 54 [PMID:24600465] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]