PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1269_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 349aa    MW: 38185.7 Da    PI: 7.8417
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1269_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004136158123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  RrC1269_p4 136 YQCKTCDRTFPSFQALGGHRASH 158
                 9***********99999998887 PP
2zf-C2H212.50.00045216238123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ Cg  F++   L  H+r+H
  RrC1269_p4 216 HECGVCGAEFTSGQALGGHMRRH 238
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.5E-8135158No hitNo description
PfamPF139122.0E-12135160IPR007087Zinc finger, C2H2
SMARTSM003550.028136158IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471136163IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SuperFamilySSF576672.5E-8211238No hitNo description
Gene3DG3DSA:3.30.160.605.1E-4214240IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-11215240IPR007087Zinc finger, C2H2
SMARTSM003550.054216238IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951216240IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEAFEEAIAA SKEQSLIFKG KRTKRQRPQS PIPFSISPPI VPSHARDIEE ESKKDGVITS  60
SSSSASWFSN NNATLKAEEE EEEQDIANCL ILLSQGHSLP IPNHEANNNN TYKFSSRRFL  120
ETSSSNGGGK AGYYVYQCKT CDRTFPSFQA LGGHRASHKK PKATLSLYSN IDVKKNIYES  180
EAVSLVTTSA IYNNNNNNNN NRSVAVYGKA GSNKVHECGV CGAEFTSGQA LGGHMRRHRG  240
AVVVAAAPVN IVTVAMAAAN TELSLSSMSF DQISDGQDHL VMPATKRAKK PVVSLDLDLN  300
LPAPEDENRV NGFTFALKQK QEQEHQPTKQ REEPKCLLLS APTLVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444409.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A3P6EAG50.0A0A3P6EAG5_BRAOL; Uncharacterized protein
STRINGBra009457.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-156C2H2 family protein