PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1264_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 421aa    MW: 47727.6 Da    PI: 9.877
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1264_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.7e-111248339
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39
                ++k +rr+++NReAAr+sR+RKka++++Le+   +L 
  RrC1264_p3 12 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLI 48
                5899**************************8655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-51073IPR004827Basic-leucine zipper domain
PfamPF001702.5E-81243IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.7721254IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.52E-71449No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-71642No hitNo description
PROSITE patternPS0003601732IPR004827Basic-leucine zipper domain
PfamPF141445.8E-29100175IPR025422Transcription factor TGA like domain
HamapMF_0037414.241311372IPR001854Ribosomal protein L29
Gene3DG3DSA:1.10.287.3108.9E-18314376IPR001854Ribosomal protein L29
SuperFamilySSF465611.7E-15315375IPR001854Ribosomal protein L29
PfamPF008317.2E-15316372IPR001854Ribosomal protein L29
CDDcd004271.91E-17316372No hitNo description
TIGRFAMsTIGR000123.2E-16317372IPR001854Ribosomal protein L29
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MFDQEASTSR HPDKIQRRLA QNREAARKSR LRKKAYVQQL ETSRLKLIQL EQELDRARQQ  60
GFYVGNGIDT SSLGFSETMN PGIAAFEMEY GHWIEEQNKQ ICELRTVLHG HVTDVELRSQ  120
VENAMKHYFE LFRMKSAAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV  180
MTDQQVLDVC NLRQSCQQAE DALSQGMEKL QHTLAECVAR GGLGEGNYIP QVNSAMERLE  240
ALVSFVNQPT MLSLSIASPG TAVTFLRGNV SATSTSSSFH GVRIPRQASA RVPAAAISSY  300
GKPSVVMMSK RDAELKEIRG KTTEELNEEV IDLKGELFML RLQKSARNEF KSSEFRRMKK  360
QVARILTVRR EREIEEGIGK RLSRKLDRQW KKSIVVRPPP SLKKLQEEEA AEEAAEAAKS  420
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v61_BZ1e-722514211173Ribosomal Protein L29
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5320570.0FJ532057.1 Brassica rapa subsp. pekinensis TGA2 protein (TGA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492457.10.0PREDICTED: transcription factor TGA1
RefseqXP_018492458.10.0PREDICTED: transcription factor TGA1
RefseqXP_018492459.10.0PREDICTED: transcription factor TGA1
SwissprotQ392371e-176TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A078F2R70.0A0A078F2R7_BRANA; BnaA06g24140D protein
TrEMBLA0A3P5YWD40.0A0A3P5YWD4_BRACM; Uncharacterized protein
TrEMBLE6Y8B70.0E6Y8B7_BRARP; TGA2 protein
STRINGBra024366.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.61e-180bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]